Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00550 ATGGGTTATGATCCAAACCATTTCATAGGTAGCCCGTATATAACTTGGAACCAAACCCTAAACCTAAGGTTGGCACTGCTTCTCACTCGCAGGTTCTGCTCCGCCCTACTCCCCGCCTTCGCTCCGGTTTTCGAAGATTTAAGAACTCCCATTTCGCGACTCATGGCTCCCAAAGAAAAATTGTTTAATGCAGCTGATAGTTCAAAGAAGGCCGACCCCAAGGCACAAGCCTTGAAAACTGCTAAAGCAGTTAAGTCAGGTGCTACGTTTAAGAAGAAGGCGAAAAAGATCCGAACTTCTGTTACCTTCCATCGTCCAAAGACTTTAAAAAAGGATAGGAACCCCAAATACCCACGCATCAGTGCTCCACCCAGGAATAAACTTGACCACTATCAGATACTGAAGTATCCTCTAACAACTGAGTCCGCAATGAAGAAGATTGAAGACAACAACACTTTGGTATTCATTGTTGACCTGCGGGCTGACAAGAAGAAGATCAAGGACGCAGTGAAGAAGATGTACGATATTCAGGCCAAGAAAGTTAACACCTTGATTAGGCCTGATGGGACTAAGAAGGCTTATGTCAGATTGACACCTGACTATGATGCTCTGGATGTAGACATGTCTCTTTCTTCTTGCCCTACAATCTCCCTTAGCCCCAATCCTTATGGTCGTGATCCTACTTCTTCACGTATTTACATTTATGGTGAATTCCTCAACTGGCTGGCTGCTTTGGTCATTTACATTTATTAG 753 0.4409 MGYDPNHFIGSPYITWNQTLNLRLALLLTRRFCSALLPAFAPVFEDLRTPISRLMAPKEKLFNAADSSKKADPKAQALKTAKAVKSGATFKKKAKKIRTSVTFHRPKTLKKDRNPKYPRISAPPRNKLDHYQILKYPLTTESAMKKIEDNNTLVFIVDLRADKKKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDYDALDVDMSLSSCPTISLSPNPYGRDPTSSRIYIYGEFLNWLAALVIYIY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00550 250 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 130 206 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vimu4g00550 250 Gene3D - 94 212 IPR012677 -
Vimu4g00550 250 Pfam Ribosomal protein L23 133 195 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vimu4g00550 250 PANTHER 60S RIBOSOMAL PROTEIN L23A 66 206 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vimu4g00550 250 FunFam 60S ribosomal protein L23a 91 212 - -
Vimu4g00550 250 Pfam Ribosomal protein L23, N-terminal domain 74 123 IPR005633 -
Vimu4g00550 250 Hamap 50S ribosomal protein L23 [rplW]. 133 213 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vimu4g00550 250 ProSitePatterns Ribosomal protein L23 signature. 191 206 IPR001014 GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00550 Vimu-Chr4 3981408 3983513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00550 86 206 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 90.083 1.09e-60 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00550 K02893 - qsa:O6P43_031159 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00550 4 3981408 3983513 Vimu5g02051 5 32334927 32336332 PCT