Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00546 ATGCCGATTTCTAGAATTGCCGTTGGAAATTCTTCGGAGTTGAGCCATGTGGACGCGCTTAAGGCTGCTCTTGCCGAGTTCATCTCAATGCTCATTTTTGTTTTTGCCGGGGAAGGCTCTGGCATGGCTTTTAATAAGCTGACAAACAATGGTTCGGCAACACCAGCAGGGTTAGTGGCAGCGTCACTGTCACATGCGTTTGCACTTTTTGTTGCTGTCTCAGTTGGTGCAAACATTTCTGGTGGTCACGTGAACCCTGCTGTCACTTTCGGTGCCTTTGTTGGAGGCCACATTACTCTCTTCAGAAGCATTTTGTACTGGATTGCTCAGTTGCTTGGCTCTGTGGTTGCTTGCTTGCTCCTTAAATTTGCCACTGGTGGAATGGAAACATCTGCATTTGCACTTTCTTCCGGTGTTGGAGCAGGGAACGCTCTGGTGTTTGAGATTGTGATGACTTTTGGGTTGGTTTACACGGTGTACGCAACTGCAGTGGATCCAAAGAAGGGTGACATTGGCATAATTGCTCCGATTGCTATTGGTTTCATAGTTGGTGCTAACATCTTAGCCGGTGGTGCTTTTGATGGTGCATCCATGAACCCTGCTGTATCTTTTGGGCCTGCTGTTGTCAGTTGGACTTGGGCTAACCATTGGGTTTATTGGGTCGGCCCATTCGCCGGTGCTGCCATTGCTGCCGTTGTGTACGAGATTTTGTTCATCAGCCAAAACACTCATGAACAGCTCCCCGTCACTGATTATTAA 759 0.4809 MPISRIAVGNSSELSHVDALKAALAEFISMLIFVFAGEGSGMAFNKLTNNGSATPAGLVAASLSHAFALFVAVSVGANISGGHVNPAVTFGAFVGGHITLFRSILYWIAQLLGSVVACLLLKFATGGMETSAFALSSGVGAGNALVFEIVMTFGLVYTVYATAVDPKKGDIGIIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPAVVSWTWANHWVYWVGPFAGAAIAAVVYEILFISQNTHEQLPVTDY 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00546 252 SUPERFAMILY Aquaporin-like 13 243 IPR023271 -
Vimu4g00546 252 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00546 252 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00546 252 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00546 252 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00546 252 PRINTS Major intrinsic protein family signature 147 165 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00546 252 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00546 252 CDD MIP 21 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00546 252 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Vimu4g00546 252 Gene3D Glycerol uptake facilitator protein. 4 252 IPR023271 -
Vimu4g00546 252 Pfam Major intrinsic protein 13 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vimu4g00546 252 PANTHER AQUAPORIN-8 6 247 IPR034294 -
Vimu4g00546 252 FunFam Probable aquaporin TIP1-1 4 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00546 Vimu-Chr4 3959897 3960943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00546 1 252 Major Intrinsic Protein MIP AT4G01470 79.762 4.91e-144 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00546 K09873 - gmx:547794 459.144