Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00545 ATGGTTCAACAGGAAGTTCGTAAAGGTCCATGGACAGAACAGGAAGACTTCAAATTGGTGTCGTTTGTTGGCTTGTTTGGAGACCGTAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAAGGTGGCGGGAGACAGTTTGAATAGAACAGGTAAAAGTTGCAGATTACGGTGGGTTAATTACCTTCATCCTGGTCTCAAACGTGGAAAGATGACACCCCAGGAAGAAAGACTCGTGCTTGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATCGCTCGCAAGTTACCAGGGCGCACTGACAACGAGATCAAGAACTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGAGAAAAAAAGAGGAGAAGCTGCATCATCAACACCAACAAAACCTTCTTCCAGTGTTCATTCCTCAAAGAAGCATGAAGTGGATCCACAGGCTTCAAAAAAGGCAGGAGAAGAGAGCTTTTACGACACAGGAGGAGCTTCAACCCAAGATGAAGGTGAAGGTGAAGGTGAGTTCTCAATGGATGATATATGGAAAGATATTGACATGTCAGAAGAGAACAACAGTTTTGTTTATGGAGAGAGTGAAGAGGGTTGCAACCCATCTGCATCATCATCGTGGGAGTATTGTTATGAGAATCTGAGGGTGATGATGGATGAGGAAAGTTTGTTTTGCCCCATGAGTACTGAACCATATTTTTATGCATTAAACGGCTAA 729 0.4376 MVQQEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLKVAGDSLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQEKKRGEAASSTPTKPSSSVHSSKKHEVDPQASKKAGEESFYDTGGASTQDEGEGEGEFSMDDIWKDIDMSEENNSFVYGESEEGCNPSASSSWEYCYENLRVMMDEESLFCPMSTEPYFYALNG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00545 242 Gene3D - 8 67 - -
Vimu4g00545 242 Pfam Myb-like DNA-binding domain 8 62 IPR001005 -
Vimu4g00545 242 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Vimu4g00545 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Vimu4g00545 242 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 153 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vimu4g00545 242 SUPERFAMILY Homeodomain-like 6 109 IPR009057 -
Vimu4g00545 242 CDD SANT 10 62 IPR001005 -
Vimu4g00545 242 Gene3D - 70 143 - -
Vimu4g00545 242 MobiDBLite consensus disorder prediction 137 153 - -
Vimu4g00545 242 SMART sant 67 115 IPR001005 -
Vimu4g00545 242 SMART sant 7 64 IPR001005 -
Vimu4g00545 242 MobiDBLite consensus disorder prediction 116 175 - -
Vimu4g00545 242 FunFam MYB transcription factor 70 151 - -
Vimu4g00545 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 62 IPR017930 -
Vimu4g00545 242 CDD SANT 70 113 IPR001005 -
Vimu4g00545 242 ProSiteProfiles Myb-like domain profile. 3 62 IPR001005 -
Vimu4g00545 242 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00545 Vimu-Chr4 3956782 3957823 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00545 1 236 MYB Transcription Factor Family AT5G59780 56.557 5.48e-80 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu4g00545 Myb_DNA-binding 1.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00545 K09422 - qsa:O6P43_028279 307.375