Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00540 ATGAAGAGAGACAGAGAAGAGGGTGAGTTAGACAACATGGCTAACTGTTTAATGCTATTGACCAAAGTTGGTGAGAGTGAATCTAATGGTAGAGATATAAGGGATGCTGAAATTGGTGATTTCAAGTGCAAAACTTGCAATAGAAGGTTTTCTTCTTTTCAAGCACTTGGTGGCCACAGAGCAAGTCACAAGAAACCGAAGCTCATGATCACAGATCTTTCGTGCCGTTACCAGTTACCTTGTACTCCAACCACCAAACAACAACCTCGGATGCACCCGTGTCCCATTTGTGGGCTTCAGTTTGCCATTGGACAAGCTTTGGGAGGACACATGAGAAAACATAGAGCCGCCATTAATGATGGTTTGTTGAATAATCGTAGAGATTCGGATTCTTTGTCTATTCTGAAGAAATCTAAAAATGGTGGAAGGTTGAATTTGTGTTTGGACTTGAACTTGATGCCATTGGAGGATGATGATCTTAAGCTCAACCTAAGAACACCCGTTCTCAATTGTTTCATTTGA 522 0.4138 MKRDREEGELDNMANCLMLLTKVGESESNGRDIRDAEIGDFKCKTCNRRFSSFQALGGHRASHKKPKLMITDLSCRYQLPCTPTTKQQPRMHPCPICGLQFAIGQALGGHMRKHRAAINDGLLNNRRDSDSLSILKKSKNGGRLNLCLDLNLMPLEDDDLKLNLRTPVLNCFI 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00540 173 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Vimu4g00540 173 SMART c2h2final6 41 63 IPR013087 -
Vimu4g00540 173 SMART c2h2final6 92 114 IPR013087 -
Vimu4g00540 173 Gene3D Classic Zinc Finger 38 114 - -
Vimu4g00540 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Vimu4g00540 173 Pfam C2H2-type zinc finger 41 66 - -
Vimu4g00540 173 Pfam C2H2-type zinc finger 92 116 - -
Vimu4g00540 173 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Vimu4g00540 173 PANTHER ZINC FINGER PROTEIN ZAT5 7 158 - -
Vimu4g00540 173 SUPERFAMILY beta-beta-alpha zinc fingers 41 114 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00540 Vimu-Chr4 3903892 3904413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00540 1 164 C2H2 Transcription Factor Family AT2G28710 46.386 2.38e-39 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g00540 zf-C2H2_6 1.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00540 - - vra:106758971 310.071