Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00522 ATGGGGAGTCGCTCTGCAATTAGAAGAGAATCAAGTAGAACTCATTCAGTTTCTCGGTGGAGTCCTACAAGAGAGCAAATAGCAATGTTGGAGGACCTCTACAGACAGGGAATGAGGACTCCAAATGCTGAGCAGATACAAGAGGTTACCTCCAGATTAAGGGCATATGGTCACATCCAAGGAAAAAATGTCTTTTACTGGTTTCAGAATCACAAAGCACGTCAAAGACAGAAGCAGAAGCTAGAAAGCATTGCATATTCCAATAGCTTTCTTCCAGCCTCACACCCCATTTGCCAAAATGTTGTCTGTGCTCCATTTTATTCTCAACAAAGTGGAATGAACTTTTATCCTCAACCAGAAAAGGTAGTTGCAGCTGGAGGTATTGTTGGGACAGTTCTACCATTTGGGATGCTGAAAATTTGTGATGGCCAGCAGATATACCAACAATTGCGACAGAGGGTACAACCTGATTATAACATAAATGATAAAAAAACCTTAACCCTCTTTCCTCTTCATCCAACAGGCATTTTGAAAGAAAAAACTGCTAATCAAGGGTCTTCACATGTTTCAGCTTCTGGTTCTCACTGA 588 0.4133 MGSRSAIRRESSRTHSVSRWSPTREQIAMLEDLYRQGMRTPNAEQIQEVTSRLRAYGHIQGKNVFYWFQNHKARQRQKQKLESIAYSNSFLPASHPICQNVVCAPFYSQQSGMNFYPQPEKVVAAGGIVGTVLPFGMLKICDGQQIYQQLRQRVQPDYNINDKKTLTLFPLHPTGILKEKTANQGSSHVSASGSH 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00522 195 MobiDBLite consensus disorder prediction 1 21 - -
Vimu4g00522 195 Gene3D - 18 83 - -
Vimu4g00522 195 ProSiteProfiles 'Homeobox' domain profile. 13 78 IPR001356 GO:0003677
Vimu4g00522 195 CDD homeodomain 19 79 IPR001356 GO:0003677
Vimu4g00522 195 SMART HOX_1 15 82 IPR001356 GO:0003677
Vimu4g00522 195 SUPERFAMILY Homeodomain-like 18 82 IPR009057 -
Vimu4g00522 195 Pfam Homeodomain 18 77 IPR001356 GO:0003677
Vimu4g00522 195 FunFam WUSCHEL-related homeobox 4 17 84 - -
Vimu4g00522 195 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 11 189 IPR044555 GO:0003700|GO:0099402
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00522 Vimu-Chr4 3805280 3806183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00522 14 111 Wox Gene Family AT5G59340 61.538 1.43e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vimu4g00522 Homeodomain 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00522 - - vum:124846494 246.514