Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00520 TTGAAGAACCATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAAATTTTTTTCATACTATTTTCTCTCTTTCTTTTGCTCTGCAGCAACAAAATCAACATCAGGCAAATGGCAGTAACAGTCCTCAGATGCTTCCCACCATGCCTCAACAGCCACAGGAACCTCACGTGGGAGTTCATGAAGCTGCAGGCTCAATCCGGCCCGGTTTGATGGTGGACCGGTCTAAGATTCCGGCCCAGGAAGGAGCTCTCAAGTGTCCTCGCTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAACTACAGCCTCTCTCAGCCGCGACACTTTTGCAAGACTTGTAGGCGTTATTGGACAAGAGGTGGCGCTCTGAGGAACGTTCCTGTCGGTGGAGGATGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCGGTTCCTACTGAGAAATCATCACTTCCCAATCCCACGAGCGCTATGCCTGAGCTTATTGGTCGATTCCCACAACCTTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGCAGGGAACGCAGGTGTTAACTTGCGTGAGATGCAAGCTCAGAACGGTTCGCATATGGGGTTTCAAATTGGTGGTCAGGGTCATGGTTCAAGTGTTACTGCTGCTGGAGGAGGATTGGAACAGTGGCGGTTTCAGCAATTTCCTTTTTTGAATGGTTTTGACTCAGCTTCTGCTGTTTCTTCCTACCCTTTTCAAACTGAAAGTGTTGAAGGTCTGGTTGGAGATATTGCCTCAGGTTCTAGGGTTACTCAGCTGCCACCGCGAGTTAAATTGGAATACAACGGTGGTTTGAATTTGTCAAGATCTCCTTTGAGTGTGTCAGAAAATAGTAACCATTACTACTCATGGACGGATTTATCCGGTCTTGCATCTTCTTCCGCTAGTCATCTCTTGTAA 963 0.4704 MKNHGFLFYSSLFRSSQLAANFFHTIFSLSFALQQQNQHQANGSNSPQMLPTMPQQPQEPHVGVHEAAGSIRPGLMVDRSKIPAQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVPTEKSSLPNPTSAMPELIGRFPQPFMASLQSMNRYGAGNAGVNLREMQAQNGSHMGFQIGGQGHGSSVTAAGGGLEQWRFQQFPFLNGFDSASAVSSYPFQTESVEGLVGDIASGSRVTQLPPRVKLEYNGGLNLSRSPLSVSENSNHYYSWTDLSGLASSSASHLL 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00520 320 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 53 217 IPR045174 GO:0003700|GO:0006355
Vimu4g00520 320 Coils Coil 316 320 - -
Vimu4g00520 320 ProSitePatterns Zinc finger Dof-type signature. 91 127 IPR003851 GO:0003677|GO:0006355
Vimu4g00520 320 ProSiteProfiles Zinc finger Dof-type profile. 89 143 IPR003851 GO:0003677|GO:0006355
Vimu4g00520 320 Pfam Dof domain, zinc finger 88 143 IPR003851 GO:0003677|GO:0006355
Vimu4g00520 320 MobiDBLite consensus disorder prediction 133 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00520 Vimu-Chr4 3783668 3784753 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00520 6 239 C2C2-Dof Transcription Factor Family AT3G55370 41.221 3.95e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Vimu4g00520 zf-Dof 2.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00520 - - gmx:100775899 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00520 4 3783668 3784753 Vimu5g02076 5 32513647 32515236 PCT