Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00516 ATGTCGTTCACAGAACCGGACGTTGTTGAGGCAATGTCGTGTGGAAGTGGACACTTTCATTTAAAAACCCAAACTCATCGAAACTTGACGTTTGATTTGCGCGTCCAATTTCGTGCATCAGTTTTCGCCTTCAGAATGGCCGACGGTGAGGATATCCAGCCACTCGTCTGCGACAATGGGACAGGAATGGTTAAGGCTGGATTTGCTGGTGATGATGCTCCAAGGGCTGTGTTTCCCAGCATTGTTGGTCGGCCACGTCATACTGGTGTGATGGTTGGGATGGGGCAAAAGGATGCATATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATACTGACTCTGAAATATCCCATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTGGCCCCAGAGGAGCACCCTGTTCTGCTCACCGAAGCCCCTCTCAATCCAAAAGCTAATCGTGAGAAAATGACCCAAATCATGTTTGAGACCTTCAACACACCTGCCATGTATGTTGCCATCCAGGCCGTTCTGTCCCTCTATGCCAGCGGCCGTACAACTGGTATTGTTCTGGACTCTGGAGACGGTGTCAGCCACACTGTACCCATTTATGAAGGGTATGCCCTCCCCCATGCCATCCTCCGTCTTGACTTAGCAGGGCGTGACCTCACTGATGCCCTGATGAAGATCCTCACTGAGCGTGGCTACTCCTTCACCACCACAGCTGAGAGAGAAATTGTAAGGGACATGAAGGAAAAACTGGCTTATATTGCCCTTGATTATGAACAAGAGCTTGAAACTTCAAAAACTAGTTCATCTGTTGAGAAGACCTATGAGCTACCTGATGGACAGGTCATCACCATTGGTGCCGAGCGCTTCCGTTGTCCTGAAGTCCTCTTCCAGCCATCCATGATTGGAATGGAAGCCGTTGGCATTCATGAGACCACATACAATTCAATTATGAAGTGCGATGTTGATATCAGGAAGGACTTGTACGGAAACATTGTCCTCAGTGGTGGTTCTACAATGTTCACCGGTATTGCTGACAGAATGAGCAAGGAAATCACGGCCCTGGCCCCAAGTAGCATGAAGATCAAGGTGGTTGCTCCACCCGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCGAAGGCAGAGTACGATGAGTCTGGTCCATCAATTGTACACAGGAAATGCTTCTAA 1269 0.4894 MSFTEPDVVEAMSCGSGHFHLKTQTHRNLTFDLRVQFRASVFAFRMADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKTYELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00516 422 FunFam Actin, muscle 227 318 - -
Vimu4g00516 422 Gene3D - 55 416 - -
Vimu4g00516 422 FunFam Putative actin-related protein 5 386 414 - -
Vimu4g00516 422 FunFam Actin, alpha skeletal muscle 48 215 - -
Vimu4g00516 422 SUPERFAMILY Actin-like ATPase domain 194 422 IPR043129 -
Vimu4g00516 422 ProSitePatterns Actins signature 2. 403 411 IPR004001 -
Vimu4g00516 422 CDD NBD_sugar-kinase_HSP70_actin 55 228 - -
Vimu4g00516 422 ProSitePatterns Actins and actin-related proteins signature. 151 163 IPR020902 -
Vimu4g00516 422 PRINTS Actin signature 108 130 IPR004000 -
Vimu4g00516 422 PRINTS Actin signature 187 206 IPR004000 -
Vimu4g00516 422 PRINTS Actin signature 73 82 IPR004000 -
Vimu4g00516 422 PRINTS Actin signature 283 299 IPR004000 -
Vimu4g00516 422 PRINTS Actin signature 96 107 IPR004000 -
Vimu4g00516 422 PRINTS Actin signature 162 175 IPR004000 -
Vimu4g00516 422 SUPERFAMILY Actin-like ATPase domain 51 200 IPR043129 -
Vimu4g00516 422 Gene3D - 185 385 - -
Vimu4g00516 422 Pfam Actin 50 422 IPR004000 -
Vimu4g00516 422 SMART actin_3 52 422 IPR004000 -
Vimu4g00516 422 ProSitePatterns Actins signature 1. 100 110 IPR004001 -
Vimu4g00516 422 FunFam Major actin 305 385 - -
Vimu4g00516 422 Gene3D Actin; Chain A, domain 4 227 318 - -
Vimu4g00516 422 PANTHER ACTIN 54 415 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00516 Vimu-Chr4 3737890 3740840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00516 46 422 Cytoskeleton Gene Families AT3G46520 97.347 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00516 K10355 - gmx:100815472 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00516 4 3737890 3740840 Vimu5g02081 5 32563612 32565637 PCT