Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00515 ATGGAACTTTTGAAACCTCTGCACCCTCACCATGCACCCATTTTGTGCCTTCCTTTCCACGGCCACCCCTCTTCTTCCCAATCTCAATCACAGCTTCCCCTCCCCATGCCTCCCAAGGTTCATGTAGCTGTTGGCAAATCGATTGATAAAGCTGTTACCTTGCTCCAATGGACCTTTAACCACTTTCAGAACGCTGAAATCGTTATATTACATGTTTATCAACCTTCTCTCACGATCCCCACTCTGTTGGGGAAATTGCCTGCATCACAGGCTAGTCCTGCTGTGGTGTCTGCTTTTCGAAGTGTGGAGAGAGAACAGACCATGAAGCTTTTAGACAAGTACTTGACCGTTAAGGCAAGCGTTATAGTAACAGAAGTTGATCAAGTCCAAAAGGGAATTGTTGATTTGGTCGTTAAGCATAATATTCAGAAGCTTGTCATTGGAGCAGTGCCAGAAAAGCTGCAATCTACTTCTGTAGTGTCCGTTTTTGTCCCATTTCTTTCACCGAATGGATCAATAAATCTTTCCACTTACAAAATCATCGTGGAAAATTGCAGTTGCATGAAAGTGAAAAGAAATTCTGGTAAAGCTAATTACACTGCCAAAAATGCTCCTCCTTCCTGTGAAGTATGGTTTATCTATAAAGGAAAAGTCATCTGGACAAGAGAGGCTTCTGAAACACCATGTTCTTCATCCTTGTCCGCTCAACCTGAGATTGCCACCGCAGAAAGCTTGAGATGTAGATCTTTTCAATATGGTAAGAATGAACTATTTGACTCGGAGTGTCTTCAACCAAATTCGGCAAGATCTGCCACTGGTTTTGGAATTGGAAGTTGGGTTCATGGGGAAATCACTGAAACTGGAGCCACTTTTTCATCCAAAGCATCCAGTTGTAGCAGTCATTGTTCCTCTCAAAATTCTTCTCGGGCTCATTTAGATACATACTTAGAGGCCATGGAAGAAAAAATTAACAACCAACTTATTGAAACCAAGAGAGAAGCCGAGGCAGTAGCAGATGAAGCCTCTGCAGAGCTATTAAAGTGTGAGAGGTTAGAAGTTGAAGCCATGGAAGCCATCAGGAAGGTCAATTTGTTTGACTCTGCCCATGTTCGTGAAGTAAAGCTTAGAAAAGAGGCTGAGGATGCACTCAGAGCTACGGTAGAAGAACAACAAAAGCTCTTGAGTGAGAGTGAAAAAATTGCTAACGAGCTTCAAATGACCATGAGAAATATTGCGCTGTTAGATAGTCGTGCTCAGGAAGCAAATCGTAGACGTGATGAAGCTGCAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATAAGGAGACAGAAAATGGAATCCCTACGATGGCTTGAGCGGTGGAGAAGTCGAGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATTGGCTTTCCTGAAGAATTACCTGAGTTAGCAGAGTTTTCATCATCAGATCTTCAAAATGCCACATGTAATTTTTCCAACAGCTTTAAAATTGTGCAAGGTGGATTTGGTTGTATATACAAGGGGGAAATGATGGGTAGGACTGTTACAATAAAAAGGTTCCATCAACATAATATGCAAGGACCAATGGAGTTTCGTCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTAATCACTTTGCTTGGTGTTTGCCCTGAAGCCTGGTCAATTGTATATGAGTACCTTCCCAATGGAACTCTTCAAGACTACCTATTCCGGAAAAGCAACAATTCTCCTTTAACATGGAATACCCGAGCACGAATGATTGCTGAAATCGCTAGTGCTCTCTGCTTCCTACATTCTTTTAAACCCGAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTTCGTTGCAAGATATGCGGATTTGGATTCTGCAGTCTGGTAAGTGAGGAGTCTCTCCTCCGTCCTAGTTTCCGTTTGAGCACTGAACCAAAGGGTGCTTTCACATATACTGATCCAGAGTTTCATAGAACTGGAATACTAACAACAAAGTCTGACATCTACTCCTTTGGACTCATCATTTTACAACTCCTCACTGGTAATACTCCAGTTGGATTAGCAGCTCTAGTACGCAATGCAGCTTCATGTGGAAAATTGTCTTCAATTCTTGATTCTTCAGCTGGAGAATGGCCCTCGCCTGTGGCATCGCGTTTGGTCGAACTGGGATTGCAATTCTGTCAACAAAATCGTAGAGACAGACCAGATTTAACACCTACACTAGTGAGAGAATTGGAGCAGATGCATGCTTCAGAAGAGCGACCAGTGCCGTCTTTCTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGACGGATTTACCTATGAAGGAGATGCCATACGTGAATGGTTGGAAAATGGGCATGACACTTCTCCCATGACTAATTTGAAATTGAATCACCTGTTTCTTACTCCCAACCACGCACTTCGACTTGCCATCCAAGACTGGCTTTGCAAATCTTGA 2541 0.429 MELLKPLHPHHAPILCLPFHGHPSSSQSQSQLPLPMPPKVHVAVGKSIDKAVTLLQWTFNHFQNAEIVILHVYQPSLTIPTLLGKLPASQASPAVVSAFRSVEREQTMKLLDKYLTVKASVIVTEVDQVQKGIVDLVVKHNIQKLVIGAVPEKLQSTSVVSVFVPFLSPNGSINLSTYKIIVENCSCMKVKRNSGKANYTAKNAPPSCEVWFIYKGKVIWTREASETPCSSSLSAQPEIATAESLRCRSFQYGKNELFDSECLQPNSARSATGFGIGSWVHGEITETGATFSSKASSCSSHCSSQNSSRAHLDTYLEAMEEKINNQLIETKREAEAVADEASAELLKCERLEVEAMEAIRKVNLFDSAHVREVKLRKEAEDALRATVEEQQKLLSESEKIANELQMTMRNIALLDSRAQEANRRRDEAADELSLIQESISTLWQERQQIRRQKMESLRWLERWRSRGQVGAAHCNGVIGFPEELPELAEFSSSDLQNATCNFSNSFKIVQGGFGCIYKGEMMGRTVTIKRFHQHNMQGPMEFRQEVQVLGSLQHPHLITLLGVCPEAWSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMIAEIASALCFLHSFKPETIIHGDLKPETVLLDSSLRCKICGFGFCSLVSEESLLRPSFRLSTEPKGAFTYTDPEFHRTGILTTKSDIYSFGLIILQLLTGNTPVGLAALVRNAASCGKLSSILDSSAGEWPSPVASRLVELGLQFCQQNRRDRPDLTPTLVRELEQMHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLNHLFLTPNHALRLAIQDWLCKS 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00515 846 CDD RING-Ubox_WDSUB1-like 777 832 - -
Vimu4g00515 846 Gene3D Transferase(Phosphotransferase) domain 1 575 776 - -
Vimu4g00515 846 PANTHER OS02G0152300 PROTEIN 40 840 - -
Vimu4g00515 846 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 777 846 IPR013083 -
Vimu4g00515 846 Pfam U-box domain 776 845 IPR003613 GO:0004842|GO:0016567
Vimu4g00515 846 Gene3D Phosphorylase Kinase; domain 1 480 574 - -
Vimu4g00515 846 SMART Ubox_2 779 842 IPR003613 GO:0004842|GO:0016567
Vimu4g00515 846 ProSiteProfiles Protein kinase domain profile. 502 772 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00515 846 Coils Coil 320 351 - -
Vimu4g00515 846 SUPERFAMILY Protein kinase-like (PK-like) 485 764 IPR011009 -
Vimu4g00515 846 SUPERFAMILY RING/U-box 766 845 - -
Vimu4g00515 846 Pfam Protein tyrosine and serine/threonine kinase 507 758 IPR001245 GO:0004672|GO:0006468
Vimu4g00515 846 Coils Coil 376 438 - -
Vimu4g00515 846 ProSiteProfiles U-box domain profile. 775 846 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00515 Vimu-Chr4 3731664 3735498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00515 39 843 U-box Gene Family AT2G45910 34.741 1.39e-160 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu4g00515 PK_Tyr_Ser-Thr 5.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00515 - - gmx:100788846 1385.55