Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00513 ATGGGAAAGAACCTGATTTCTTCCGACCAGACCGCTATTCAAATTCAGGACAATAATCCAGGATGCATGTGGGGCATGCTTAAAATTCTTGATTACCATCGTTGGCGCGTAAAAAAGGTGTTTCCCCACAAAAGAAGACATGCCACATATAAGAGAAAAAGCATTTTGTATAACCAACAAGATGGAGTTACAGAATGGGAGCCCCTCCTGGTCAGACAAGAAAGCGAAAAATTGCATGCTGCAGGCAAAAGTTCTCCCAGATACAACCAAAAGGAAACACGAACTGGGAAAGAGTTTAACAAAGAATACTCCAAAGGCAGTGATACCATGGACTACTCGAGGAAAAACCAGGCCAGTAAGGAGTATGCACTTCATCTGGAAAAGAATGGCAAGACAACAGAAGCTTACCTTAACCATAAGCCTACGGAAACAAACAACCATAATGGAGACATTTCCTATAAATTTGAGAAACATTCTGATGTTTTTGAGTTTCTTAGGGTGGAGAAGGATTTATTACTCAAATTTCTGCGAGACATGGACTTCAGTGGGAAAAAACTCCATCAACCTTCCCAAACCAATGCAAGATTGACAAAATGTGGGTCATTTCCTTTAGCCTCAACTTCACAGATGAGGAACATTAGCTCTAGGTCGTTGAAACACAAGCAAAACGAAATTTATCCTAAGGGAGAAAAACTGTTTGATGTTACCCACGAATCAAACATGTCAGTGTCCAGTTTTGTGAAAGATATTTCTCATGAGAAGCCACGAACTTTGGTGAGTGATCTTGGTGTTGATAGTGCCATGAAACAAAAAGCAATTATTTCTTCAAGGTCTTCTCATGAATCAAATCACAGAGGGTGGAATCAGTTGGTTCTTCATCAATTCAAAGCTATAAAGCAGAAGATAAAACATGCTCTTGTGGAATTCAGAAAAAGTGGAAAGCAAACTTCTGCTGAAGCTATCCAACACATAGCTTCGCCTGAATATAGCATCATCAATAATGAGGAAGAGATCTCGCAAACTTTAGAAGATGGCGTGGTTCAAGTATACAAAAGGAGCAAAAGCTCAAATGAAACCAAAGCTTCTGATTATGATTCCAACAAACATGATGCCCGGCTCATGCGGAGAACATCTTCTCTGAATGAATCATTGGATAGATATACTCAGTTGTTCGAGAAAAGCTTCAGCAAAGAAGCTAAGTGGCAAAGCTCAAAGTCTAAAAGCTTAAAATTGACACACGAGGATAGGATCCACAAAAGTTCACATGTTCCTAACTTTTCAAGAAGTAATTTGTCTATGCCTAATCTCGAGACTTTAGGCTTCCTTGTACAGGAGGTACTTTTTGATACAAATGATGTAGGGAATACCGAGGAAACTTATGATCGTGTTCATAGAAAATCAGTGAGTCTTCCTTTGAAGATGGACAAATCCCTTGATAATTTTAAAGAGGTTGAAATTGTGGAAACAGATAAGGTTTTGGAGAAAATTGATGAAGTTACATGTGACCAAAAGGAGGACATGGATGAGGCAGCAGCGGGGGATGAAAGTTTTACACAAGAAATAGAGGAAATGAGTAATATGACTGCCTATCTTAGCAAGGAGGTGATGCCAATTCTTGAAACTGCCTGCGAGGACAATATAACCAGCCACAAAGAAGGAACAGAATTGTATACCCAAGTCTCTACATTGGACGAATTGGAAGGTGATTTATCAGATAAAGGAAGTGTATTGCCAGACTTTTCATCCAACAGAAATGCAAGTGGAATAACAGCTGAAGATAGAGATTACCCTTCCAATTTCAAATATTTAAAAAATGTTCTTGAATTTTCGGGATTCTTGGGAAATGAGCAAAGTCAGATGCGATACACAATAGACCAGCCACTAAAGCCCTCCTTGTTCAAAGATTTGGAAGCGAGTTTGCAGCATGAAATAGAAGCCTCTGAAGAAGAGACAACCAACCATTATGATCACCAACTCATTTTTAACTTAGTGAACGAGGTGCTGCTGGAAATTTATGGAAGGTCGCCAACTTACTTCCCAAGAGCATTCTCCTTCAACCCCCGCCTCCATCCAATGCCTAAAGGGCACTATCTTCTGAATGAAGTGTGGACTAGTGTTAATTCATACCTGACCTTGAGACCTGAGCTAGATCAGACATTAGATGATGTTGTGGGTCGTGATTTGGCAAAAGGAAGAGGGTGGATGATCCTTCAAGAGGAAGAGGAGTACGTAGCACTTGAACTAGAAGAGATGATAATGGATGATTTGTTTGATGAATTTATCTTCTCATGA 2292 0.3975 MGKNLISSDQTAIQIQDNNPGCMWGMLKILDYHRWRVKKVFPHKRRHATYKRKSILYNQQDGVTEWEPLLVRQESEKLHAAGKSSPRYNQKETRTGKEFNKEYSKGSDTMDYSRKNQASKEYALHLEKNGKTTEAYLNHKPTETNNHNGDISYKFEKHSDVFEFLRVEKDLLLKFLRDMDFSGKKLHQPSQTNARLTKCGSFPLASTSQMRNISSRSLKHKQNEIYPKGEKLFDVTHESNMSVSSFVKDISHEKPRTLVSDLGVDSAMKQKAIISSRSSHESNHRGWNQLVLHQFKAIKQKIKHALVEFRKSGKQTSAEAIQHIASPEYSIINNEEEISQTLEDGVVQVYKRSKSSNETKASDYDSNKHDARLMRRTSSLNESLDRYTQLFEKSFSKEAKWQSSKSKSLKLTHEDRIHKSSHVPNFSRSNLSMPNLETLGFLVQEVLFDTNDVGNTEETYDRVHRKSVSLPLKMDKSLDNFKEVEIVETDKVLEKIDEVTCDQKEDMDEAAAGDESFTQEIEEMSNMTAYLSKEVMPILETACEDNITSHKEGTELYTQVSTLDELEGDLSDKGSVLPDFSSNRNASGITAEDRDYPSNFKYLKNVLEFSGFLGNEQSQMRYTIDQPLKPSLFKDLEASLQHEIEASEEETTNHYDHQLIFNLVNEVLLEIYGRSPTYFPRAFSFNPRLHPMPKGHYLLNEVWTSVNSYLTLRPELDQTLDDVVGRDLAKGRGWMILQEEEEYVALELEEMIMDDLFDEFIFS 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00513 763 Pfam Domain of unknown function (DUF4378) 600 759 IPR025486 -
Vimu4g00513 763 MobiDBLite consensus disorder prediction 77 96 - -
Vimu4g00513 763 PANTHER PROTEIN TRM32 1 763 IPR044257 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00513 Vimu-Chr4 3713410 3716385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00513 160 753 TRM (TON1 Recruiting Motif) Superfamily AT5G02390 27.888 2.63e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00513 - - vum:124834749 1417.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00513 4 3713410 3716385 Vimu4g00513 4 3713410 3716385 ECH