Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00507 ATGGGAGTATGTTTGAGCGCCCAAATTAAAGCTGAAAGCCCGTATAACACTGTAGTCTTAAAGCTTAACCTTAACACTGTGAATCTTTTTCTTCACATATACCAATGTGATCCTTGTGTAAACATGACTGAAGATCCAGTTGTATGGCTCGGGTTCAATTCAAAGTATGTGAGTACAGATGGAAATTATCTTGGCAGCACAAACGATAAGGTTTCAGGAAACTCGGTCCCTCTGACTCCTCGGAGTGAGGGTGAGATCTTGCAGTCATCCAATTTGAAGAGCTTTACCTTATCAGAACTTAAGACGGCCACTAGGAATTTCCGTCCAGACAGTGTGTTAGGAGAAGGTGGTTTTGGATCAGTTTTTAAAGGGTGGATTGATGAGAATTCGTTAACTGCCACAAAACCTGGCACTGGTATTGTTATTGCTGTGAAAAGACTTAATCAAGATGGCATCCAGGGTCACAGGGAGTGGTTGGCTGAAGTCAACTATCTTGGACAGCTTTCTCATCCTCATCTAGTGAGATTGATTGGGTTTTGCCTGGAAGACGAACACCGCCTTCTCGTCTATGAATTTATGCCTCGTGGAAGTTTGGAAAACCATTTGTTCAGGAGTAAGTTTTCCATCTTCTCTCATAGTCTTAACTTGAGAAATCTGTTTAACACTGGCAATATGTACTGTAACAGGAGCCTCCGTTTGAAAGTTGCTCTTGATGCTGCCAAAGGGCTTGCCTTTCTACACAGTGCTGAAACAAAAGTGATATATAGAGATTTTAAGACTTCAAATATATTGCTGGATTCGAATTACAATGCAAAACTTTCTGATTTTGGGCTGGCAAAGGATGGACCAACGGGTGACAAAAGCCATGTCTCCACCAGGGTAATGGGAACCTACGGATATGCAGCTCCTGAATATCTAGCCACAGGTCATCTTACTGCCAAGAGTGATGTCTATAGTTTTGGAGTTGTCCTGCTAGAAATGTTATCTGGAAAGAGGGCAGTTGACAAGAATAGACCATCTGGACAGCACAATTTGGTGGAATGGGCTAAACCATACCTGGCAAACAAACGTAAAATATTTCGTGTGTTGGACACACGGCTTGAAGGACAATATTCAACGGATGATGCCTATAAAGTGGCCAACCTTGCCTTGCGGTGCCTGTCAATAGATTCCAAGTTCAGGCCAAACATGGATGAAGTGGTCAGAACATTGGAGCAGCTGCAGGTTCCTAATGCAAATGGAGGCAATCAAAATCCTTCTCGTGTTAGAAGAAGAAGTGCTGATGTAAGTAGAGGCTATCAAAATCCTTCTGTTAATGGATCTCGAGTTCGTAGAAGAAGTGCTGATGACATTAGCCGCATGGAGACTCCCTCAGCTTATCCCAGGCCCTCTGCATCCCCTCTCTATACATAA 1413 0.431 MGVCLSAQIKAESPYNTVVLKLNLNTVNLFLHIYQCDPCVNMTEDPVVWLGFNSKYVSTDGNYLGSTNDKVSGNSVPLTPRSEGEILQSSNLKSFTLSELKTATRNFRPDSVLGEGGFGSVFKGWIDENSLTATKPGTGIVIAVKRLNQDGIQGHREWLAEVNYLGQLSHPHLVRLIGFCLEDEHRLLVYEFMPRGSLENHLFRSKFSIFSHSLNLRNLFNTGNMYCNRSLRLKVALDAAKGLAFLHSAETKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYLATGHLTAKSDVYSFGVVLLEMLSGKRAVDKNRPSGQHNLVEWAKPYLANKRKIFRVLDTRLEGQYSTDDAYKVANLALRCLSIDSKFRPNMDEVVRTLEQLQVPNANGGNQNPSRVRRRSADVSRGYQNPSVNGSRVRRRSADDISRMETPSAYPRPSASPLYT 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00507 470 FunFam Serine/threonine-protein kinase BIK1 74 192 - -
Vimu4g00507 470 Gene3D Transferase(Phosphotransferase) domain 1 193 427 - -
Vimu4g00507 470 Pfam Protein tyrosine and serine/threonine kinase 111 404 IPR001245 GO:0004672|GO:0006468
Vimu4g00507 470 MobiDBLite consensus disorder prediction 408 470 - -
Vimu4g00507 470 ProSitePatterns Serine/Threonine protein kinases active-site signature. 253 265 IPR008271 GO:0004672|GO:0006468
Vimu4g00507 470 ProSiteProfiles Protein kinase domain profile. 107 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00507 470 Gene3D Phosphorylase Kinase; domain 1 82 192 - -
Vimu4g00507 470 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 219 418 - -
Vimu4g00507 470 MobiDBLite consensus disorder prediction 408 423 - -
Vimu4g00507 470 SUPERFAMILY Protein kinase-like (PK-like) 82 404 IPR011009 -
Vimu4g00507 470 PANTHER OS01G0588500 PROTEIN-RELATED 75 408 - -
Vimu4g00507 470 ProSitePatterns Protein kinases ATP-binding region signature. 113 145 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00507 Vimu-Chr4 3678789 3681089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00507 85 404 Glycoside Hydrolase AT3G07070 46.106 2.27e-95 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vimu4g00507 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00507 - - gmx:100798404 748.429