Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00503 TTTGAGTTCCCACCAAGAAGACTTCTCGTCCATAAGTACTCCATCCATCCCTACTCGCTAACCCACTCAATACTCATCCCATTATCTCTCTCTTCTTCGCTTTCTCTTCACTTTCAAGCCAAAAAAATGGCTCTGCTAACTGTAGCACTGTGCCTTGCGTCCATAATGTGGATGGTGGAAGCTCGAATTCCAGGCGTTTATACCGGCGGCGCGTGGCAAAGTGCTCACGCAACCTTCTACGGAGGATCCGATGCATCCGGCACAATGGGGGGAGCTTGCGGGTATGGAAACCTGTACAGCCAAGGGTACGGAGTTAACACGGCGGCGTTGAGCACGGCACTGTTCAACAACGGCCTGAGCTGCGGGGCGTGTTTTGAGATAAAATGCGCAAACGACAAGCAGTGGTGTCACTCCGGAAGCCCTTCCATCTTCATCACTGCTACCAACTTCTGTCCCCCAAACTACGCTCTTCCTAACGACAATGGCGGCTGGTGCAACCCCCCTCGCCCTCACTTCGACCTGGCCATGCCCATGTTCCTCAAAATCGCGGAATACCGCGCCGGCATCGTACCTGTCGCCTACCGCAGGGTGCCATGTATGAAGCATGGGGGAATGAGGTTCACGATCAATGGCTTCCGTTACTTCAACTTGGTGCTGATCAGCAACGTGGCGGGTGCAGGGGATCTGGTGCACACCTACGTTAAAGGGTCGCGAACCGGTTGGATGCCAATGAGCCGGAACTGGGGTCAAAACTGGCAGTCAAACGCGGTTCTTGTGGGACAAGCTTTGTCTTTCAGAGTCACCGCCAGCGACCGCCGCTCTTCCACCTCGTGGAACATTGCTCCGCCACATTGGCAATTTGGTCAAACTTTCACCGGAAAAAACTTCCGTGTCTGA 897 0.5407 FEFPPRRLLVHKYSIHPYSLTHSILIPLSLSSSLSLHFQAKKMALLTVALCLASIMWMVEARIPGVYTGGAWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDKQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVPCMKHGGMRFTINGFRYFNLVLISNVAGAGDLVHTYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTASDRRSSTSWNIAPPHWQFGQTFTGKNFRV 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00503 298 Pfam Expansin C-terminal domain 205 282 IPR007117 -
Vimu4g00503 298 FunFam Expansin 61 200 - -
Vimu4g00503 298 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Vimu4g00503 298 PRINTS Expansin/Lol pI family signature 71 86 IPR007118 GO:0005576
Vimu4g00503 298 PRINTS Expansin/Lol pI family signature 187 203 IPR007118 GO:0005576
Vimu4g00503 298 PRINTS Expansin/Lol pI family signature 111 129 IPR007118 GO:0005576
Vimu4g00503 298 PRINTS Expansin/Lol pI family signature 279 293 IPR007118 GO:0005576
Vimu4g00503 298 PRINTS Expansin/Lol pI family signature 89 107 IPR007118 GO:0005576
Vimu4g00503 298 PRINTS Expansin signature 143 153 IPR002963 GO:0009664
Vimu4g00503 298 PRINTS Expansin signature 179 192 IPR002963 GO:0009664
Vimu4g00503 298 PRINTS Expansin signature 203 215 IPR002963 GO:0009664
Vimu4g00503 298 PRINTS Expansin signature 129 140 IPR002963 GO:0009664
Vimu4g00503 298 PRINTS Expansin signature 215 236 IPR002963 GO:0009664
Vimu4g00503 298 PRINTS Expansin signature 250 271 IPR002963 GO:0009664
Vimu4g00503 298 PRINTS Expansin signature 162 179 IPR002963 GO:0009664
Vimu4g00503 298 PRINTS Expansin signature 279 295 IPR002963 GO:0009664
Vimu4g00503 298 PRINTS Expansin signature 102 116 IPR002963 GO:0009664
Vimu4g00503 298 PANTHER EXPANSIN-A15 46 296 IPR002963 GO:0009664
Vimu4g00503 298 CDD DPBB_EXPA_N 72 199 - -
Vimu4g00503 298 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 214 293 IPR007117 -
Vimu4g00503 298 Pfam Lytic transglycolase 107 194 IPR009009 -
Vimu4g00503 298 SMART dpbb_1 107 194 IPR007112 -
Vimu4g00503 298 SUPERFAMILY PHL pollen allergen 201 293 IPR036749 -
Vimu4g00503 298 FunFam Expansin 204 296 - -
Vimu4g00503 298 Gene3D - 205 296 IPR036749 -
Vimu4g00503 298 Gene3D - 60 199 IPR036908 -
Vimu4g00503 298 SUPERFAMILY Barwin-like endoglucanases 71 222 IPR036908 -
Vimu4g00503 298 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 90 204 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00503 Vimu-Chr4 3654551 3655623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00503 40 298 Expansin Gene Family AT2G39700 81.467 6.96e-161 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00503 - - gmx:100791522 516.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00503 4 3654551 3655623 Vimu5g02094 5 32648272 32648685 PCT