Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00495 ATGCTTTCCACCAACTCTCTTGTGCAAAATTTTGGGGGTACTATCTCTGTGTTTTCGGATCAGAACCAAGTGACGGAGGGGATTGAGTTAGATGATTCATCTTCTTCTTCTGGTACTAGCTCAAGTGGAGAATCGACAAAGTACTCCAACAACATCCTGAGATACATAAGCGACATCCTCATGGACGAGGAAGACGACCTGTTAAACAAACCTTGCATGTTGCAGGAATGTTTGAGACTCCAGGCTGCTGAAAAATCATTCCTTGATGTCCTTGTCCATGACAGCCACCCTTCTTTCAGTGGTGAAAGCATTGGCATCGCAGATTCTGATGAAAATTTTGGTCGCACTGTTAGTTTTGAGAGCAATGGCAGCTGCACCACTGATAATTCATGTGACTCTGACTTGGTCAATGGCGTAGGTGAATTTGACTCTTCTTTCTTACCACAGCAAACCCATCTAGTTTATTCCCCAGATGTTGTTGATGCATTTAGGGTTCGTGATGGAACCTGGAATCTCTTTCAGTCTCATACGAGGCCGTTTATGGTGGAAGAGGGTCGTTCAACTTCAGCATCCAGAGAAAAGAGAAGCCATGAGCTGGATGATGATGCTGGTCTTGAACAAGATGGAAGAAGAGGCGCCAAGGTTTCAGCTGTCTTTTATGGCGAGTCAGAGTCACCAGAGATCTTAGATGAGGTGCTGCTTTTTCAAATTGGAAAAAGTGGATGTTCTTCTGAACCATCACAGGGTGTTGATTTAGGAGGGTCCAATGGAAAGGGAGGACGCTCACGTTCAAAGAAAGGGTCCAACAAAGCAGGTACAGCCGTAGATTTATGGACCCTTCTAACTCAATGTGCACAAGCAGTGGCAAGCTTTGACCAAAGGAATGCAAATGACTTACTCGGCCAGATTAAGCAACACTCTTCACCCTTTGGGGATGGACTCCAGCGATTGGCTCATTACTTTGCCAAGGGCCTTGAGATAAGGTTGGCTGCTGGGACCCCATCATACGTGCCACTAGAAGTAGCAACTGCTGCTGATATGTTGAAAGCTTACAAACTATTTGTCACATCCTCTCCTTTGCAAAGGATGTCAAATTATTTGACAACCAGGACAGTCATTAGTCTTGTGGAAAATGAGAGCAGTGTTCACATTATTGACTTTGGCATTTGCTATGGTTTTCAGTGGCCCTGCCTTATCAAAAGACTGTCAGAAAGAGATGGTGGTCCTCCAAGGCTGCGTATAACAGGAATTGATCTTCCTCGGCCAGGATTTCGGCCTGCGGAAAGGGTTGAGGAGACAGGGCGGCGTTTGGCAAACTACTGCAAGAAGTTCAATGTTCCTTTTGAGTACAACTGCCTTGCACAGAAATGGGAGACTATAAAACTTGCAGATCTCAAGATAGACAGGAATGAAGTCACCGTTGTTAGCTGTTTCTACCGGCTGAAGAACCTGCCTGATGAAACCGTGGCAGCGAACAGTCCAAGAGATGCTGTGTTAAAGTTGATTAGGAAGATCAATCCAAGCATTTTCTTCCATGGGGTGGTCAATGGCACTTATAGTGCTCCTTTTTTCTTGACACGGTTCAGGGAAGCACTGTACCACTTCTCATCACTGTTTGATATGTTTGAGGTTAATGTGCCACGTGAAGATTCGCAGAGGTTGATGTTTGAGAAAGGGTTGCTTGGAAGGGATGCCATCAATGTTATAGCGTGTGAGGGGGCAGAGAGAGTTGAGAGACCTGAGACTTACAAGCAGTGGCAGGTTAGGAACCTGAGAGCTGGATTCAAACAAGTTAATTTTGATCCTCAGCTGGTGAATTATGCGAAACAAATGGTGAAGAAGGAATATCACAAAGATTTTGTTGTGGCTGAGGATGGGAAGTGGCTTTTGCAGGGATGGAAAGGGCGAATTCTGAATGCCATTTCTGCTTGGACTCCTGCTTGA 1944 0.4532 MLSTNSLVQNFGGTISVFSDQNQVTEGIELDDSSSSSGTSSSGESTKYSNNILRYISDILMDEEDDLLNKPCMLQECLRLQAAEKSFLDVLVHDSHPSFSGESIGIADSDENFGRTVSFESNGSCTTDNSCDSDLVNGVGEFDSSFLPQQTHLVYSPDVVDAFRVRDGTWNLFQSHTRPFMVEEGRSTSASREKRSHELDDDAGLEQDGRRGAKVSAVFYGESESPEILDEVLLFQIGKSGCSSEPSQGVDLGGSNGKGGRSRSKKGSNKAGTAVDLWTLLTQCAQAVASFDQRNANDLLGQIKQHSSPFGDGLQRLAHYFAKGLEIRLAAGTPSYVPLEVATAADMLKAYKLFVTSSPLQRMSNYLTTRTVISLVENESSVHIIDFGICYGFQWPCLIKRLSERDGGPPRLRITGIDLPRPGFRPAERVEETGRRLANYCKKFNVPFEYNCLAQKWETIKLADLKIDRNEVTVVSCFYRLKNLPDETVAANSPRDAVLKLIRKINPSIFFHGVVNGTYSAPFFLTRFREALYHFSSLFDMFEVNVPREDSQRLMFEKGLLGRDAINVIACEGAERVERPETYKQWQVRNLRAGFKQVNFDPQLVNYAKQMVKKEYHKDFVVAEDGKWLLQGWKGRILNAISAWTPA 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00495 647 ProSiteProfiles GRAS family profile. 268 645 IPR005202 -
Vimu4g00495 647 MobiDBLite consensus disorder prediction 187 207 - -
Vimu4g00495 647 Pfam GRAS domain family 279 645 IPR005202 -
Vimu4g00495 647 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 208 638 IPR005202 -
Vimu4g00495 647 MobiDBLite consensus disorder prediction 183 207 - -
Vimu4g00495 647 MobiDBLite consensus disorder prediction 242 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00495 Vimu-Chr4 3590889 3592832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00495 52 647 GRAS Transcription Factor Family AT5G59450 44.059 2.23e-166 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu4g00495 GRAS 8.5e-110 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00495 - - aprc:113855970 969.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00495 4 3590889 3592832 Vimu4g00495 4 3590889 3592832 ECH
Vimu4g00495 4 3590889 3592832 Vimu5g02104 5 32705809 32707914 PCT