Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00486 ATGGTCTGTAGCCACCAGAAGAGACGCGTTGCTCTCACTCTTTATAAGGGTCTTATCTATTCCGCTCCTATTTGGAATTCGGCAATTATAACTTCATTTCCTCTCTCCACCTTTTCTTCTCTACAGAACAAAAACATGAGCTCCGACACGACGTCGTATTGGTGCTACAGCTGCACTCGCTTCGTTCACATCCAGGAGCACCACGACGTCCTTTGCCCTCGCTGCCAGGGCGGTTTCGTCGAGAAGGTTCAGGCCGGCCACTCGCCGGCAGTCTCCCTCATAGCTGATGGCGCCTCCAGAAGGCAGGGATTTCGCCGCCGACGCCGCAACGCCGGGACTCATTCGCCGTTCAACCCGGTGATCGTGCTCCGGGGACCGGGAGAGGACGAGGAGAGCAGTTTTGAGTTATATTACGACGGCGACGACGGCGCGGGTCTCCGACCGCTGCCGTCGACGATGTCGGAGTTTTTGCTTGGATCGGGATTCGATCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGATTTGGGAGGGCGGAGAATCCGCCGGCGTCCAAGGCGGCGATAGAGTCAATGCCGACTGTGCAAATCGCCGAGTCTCAGGTCGTGACAGAGACGCACTGCGCCGTTTGCAAAGAGGCCTTCGAGCTAGGCGCGTTGGCGCGTGAGATGCCTTGCAAGCACCTCTACCACTCCGATTGCATTCTCCCGTGGCTCTCGATGCGAAACTCGTGCCCGGTGTGCCGCCACGAGTTGCCATCGGAGCAAGCGTCATCGGAGAGCAGAGTTGCGGGCCAGATCGAAGAGGAAGCGGTAGGGTTGACCATATGGAGGCTGCCTGGCGGCGGATTCGCCGTGGGTAGGTTCGCCGGCGAGAGCCACTTACCGGTGGTGTACACGGAGATGGAGAGTGGTGGGAATTCGAGCGAAGGTTCAAGGAGAATCTCTCTGTCAGTAGGAAGCGGGAGAGTGAGGGAAAGTCGGGGTGGAATTGGCAGAATATTCCGGAATTGGTTTGGGAGAATTGGGGCTTTGACTAGAAGCCGTAGCCTTTCAACTTCGCTCTTCAATAGAAGAAGAAGTTCCAGGAGAACCTGGGTTTTGGAAGATTGA 1116 0.5681 MVCSHQKRRVALTLYKGLIYSAPIWNSAIITSFPLSTFSSLQNKNMSSDTTSYWCYSCTRFVHIQEHHDVLCPRCQGGFVEKVQAGHSPAVSLIADGASRRQGFRRRRRNAGTHSPFNPVIVLRGPGEDEESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRAENPPASKAAIESMPTVQIAESQVVTETHCAVCKEAFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPSEQASSESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMESGGNSSEGSRRISLSVGSGRVRESRGGIGRIFRNWFGRIGALTRSRSLSTSLFNRRRSSRRTWVLED 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00486 371 SMART ring_2 209 249 IPR001841 -
Vimu4g00486 371 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Vimu4g00486 371 Pfam zinc-ribbon 51 82 IPR039525 GO:0061630
Vimu4g00486 371 Pfam Protein of unknown function (DUF1117) 273 361 IPR010543 -
Vimu4g00486 371 CDD RING-H2_RNF126-like 209 250 - -
Vimu4g00486 371 FunFam E3 ubiquitin-protein ligase RING1-like 171 256 - -
Vimu4g00486 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 100 254 - -
Vimu4g00486 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 175 256 IPR013083 -
Vimu4g00486 371 Pfam Ring finger domain 208 250 IPR001841 -
Vimu4g00486 371 SUPERFAMILY RING/U-box 189 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00486 Vimu-Chr4 3519006 3520121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00486 138 261 C3H Transcription Factor Family AT5G01980 41.129 7.25e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00486 K11982 - gmx:100784822 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00486 4 3519006 3520121 Vimu5g02113 5 32748962 32750044 PCT