Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00484 ATGAGAGAACAAAGCTTTGGAGATAAGATGCATGGAATTACAACAACTCTCCCTCTCACTGCAAACACCTTCCTTTATTGTGCCAACAACACTCGCTTTTCTCTCGGATCTTTTCAATCAAATTGTCGCATACCCACTTCTAAAATCAGCTATGCAAGTCGTTTTCACCGTTCACAATGGAAGCAGCAGAGAAAAGAAAGATGGGGCAATAGAATGATGGTGGTGAGAGCAAGGCGTGGCGAGTCGCCGTACGAAGTTTTGGGTGTGTCTCCATCAGCAACTGTCGACGAAATCAAAAGGGCGTATCGGAAACTTGCTCTTAAGTATCATCCTGATGTCAATAAAGAGGAAAAGGCACAGGAGAAATTTATGAGGATAAAACATGCATACAATACATTGCTAAATTCCAGTTCCCGCAAAAGATATGATTCTGGAAGTCAAGGTTACGATTTTTCTCAAGGAAGCCAAAGTAGGAATGCACAACCAGAAGAAGAATTTTATGGACTAGACATCATGGATCATGTTGGCCCTAAGTTTAGCCTGTATTCATTAAAATTCTCCTGGGCATTGGTTGCCCCATATAAATCTACTACCAACAAGGAGGAATTCTTTAAGGATCTTCAAGAAGAATTCAGGAACTGGGAAGCAAACGCTGCTTCAGAAGGAAAGCCAAAGAGCCTATGGGAGGAATTGGCGGAAATAGGAGAAGAATTTGTGGAGTTCCTTGAGAAAGAACTCAATATTACAGATCAGAATGGTGATTACGAGACACCTCAAGGAGAAAATGCATCCAACTTTTCTGGGAGAGAGACACCAAACAGTAGCAGAAATCCAGGTGAAGCTAGCAAGGGAAGCGTTGAGGATAACATTGAGGAAATAGAAGCCACTCTGGCGCAGTTGAAAAGGGAATTAGGCTTGTAG 921 0.4224 MREQSFGDKMHGITTTLPLTANTFLYCANNTRFSLGSFQSNCRIPTSKISYASRFHRSQWKQQRKERWGNRMMVVRARRGESPYEVLGVSPSATVDEIKRAYRKLALKYHPDVNKEEKAQEKFMRIKHAYNTLLNSSSRKRYDSGSQGYDFSQGSQSRNAQPEEEFYGLDIMDHVGPKFSLYSLKFSWALVAPYKSTTNKEEFFKDLQEEFRNWEANAASEGKPKSLWEELAEIGEEFVEFLEKELNITDQNGDYETPQGENASNFSGRETPNSSRNPGEASKGSVEDNIEEIEATLAQLKRELGL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00484 306 Coils Coil 283 306 - -
Vimu4g00484 306 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Vimu4g00484 306 Pfam DnaJ domain 83 143 IPR001623 -
Vimu4g00484 306 CDD DnaJ 83 135 IPR001623 -
Vimu4g00484 306 ProSiteProfiles dnaJ domain profile. 82 146 IPR001623 -
Vimu4g00484 306 MobiDBLite consensus disorder prediction 138 159 - -
Vimu4g00484 306 SUPERFAMILY Chaperone J-domain 49 142 IPR036869 -
Vimu4g00484 306 PRINTS DnaJ domain signature 102 117 IPR001623 -
Vimu4g00484 306 PRINTS DnaJ domain signature 84 102 IPR001623 -
Vimu4g00484 306 PRINTS DnaJ domain signature 118 138 IPR001623 -
Vimu4g00484 306 SMART dnaj_3 81 138 IPR001623 -
Vimu4g00484 306 Gene3D DnaJ domain 70 166 IPR036869 -
Vimu4g00484 306 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 48 254 - -
Vimu4g00484 306 MobiDBLite consensus disorder prediction 250 290 - -
Vimu4g00484 306 MobiDBLite consensus disorder prediction 251 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00484 Vimu-Chr4 3505884 3508838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00484 84 144 C2H2 Transcription Factor Family AT1G74250 41.791 8.17e-08 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00484 4 3505884 3508838 Vimu4g00484 4 3505884 3508838 ECH