Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00469 ATGAGGAAGCCAGAACTGTGTAGTGGTAATGGTAAACACAGCAAGTTTAGAAAGGGATTGTGGTCACCAGAAGAAGATGAGAAACTCATGAACTACATGCTCAACAATGGACAAGGTTGTTGGAGCGACGTCGCAAGAAATGCTGGCCTCCAAAGATGTGGCAAAAGTTGTCGGCTACGATGGATCAATTACCTCAGGCCTGATCTTAAGAGAGGTGCTTTCTCACCCCAAGAAGAGGAACTCATCATCCACTTTCATTCCTTTCTTGGAAACAGGTTCATCTATCTTCACCTACTTTCAGATCCATGCATCCTTAATAACTGCTAA 327 0.4373 MRKPELCSGNGKHSKFRKGLWSPEEDEKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSFLGNRFIYLHLLSDPCILNNC 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00469 108 FunFam MYB transcription factor 15 71 - -
Vimu4g00469 108 SUPERFAMILY Homeodomain-like 20 94 IPR009057 -
Vimu4g00469 108 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Vimu4g00469 108 PANTHER MYB DOMAIN PROTEIN 55 11 93 - -
Vimu4g00469 108 Gene3D - 18 70 - -
Vimu4g00469 108 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 13 69 IPR017930 -
Vimu4g00469 108 CDD SANT 21 65 IPR001005 -
Vimu4g00469 108 Pfam Myb-like DNA-binding domain 21 80 - -
Vimu4g00469 108 SMART sant 17 67 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00469 Vimu-Chr4 3386599 3386925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00469 1 93 MYB Transcription Factor Family AT5G12870 78.947 1.35e-50 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu4g00469 Myb_DNA-bind_6 1.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00469 K09422 - gmx:100799410 177.563