Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00468 ATGGAGTACTCTGTGGAATCTTTGGTTAGAGATCTTAAGAACGTGAGGAAGTATTTCGGGAGTGGAAAAACAAAGGAAGCGTCATGGAGAGAATCACAGCTTAAAGGGTTGCACAGTTTTCTAGTTGAAAGAGAGCAAGAAATTTTGAATGCCCTCAAGCATGATTTGGGGAAGCATTGCGTTGAGGCCTTCAGGGATGAGGTAGGAACGTTGGTGAAGACCTTAAACTATGCAATAAAGCATTTGAAAAAATGGATGGCGGGGGAAGAGGCTAAATTGCCAAAAATAGCACTGCTTTCGAGTGCTGAGATAGTTCCTGAACCACTTGGTCTTGTTCTCATAATCTCATCATGGAACTTCCCTTTTGGACTGTCCTTGGAGCCACTGATAGGAGCAGTAGCTGCTGGAAACACTGCAGTTCTGAAGCCTTCAGAGATGTCCCCTACCTGCTCTTCTCTTTTAGCCACTGTCCTTCCAGCTTACTTGGACAACAATGCCATTAAAGTCATCGAAGGTGGACCAGAAGTGGGAGAGCTACTCTTACAGCAAAGATGGGATAAGATTTTCTTCACAGGAAGTGCGAGGGTGGGAAGAATTGTTATGTCTGCTGCAGCTGTGCATCTTACTCCAGTGACTTTGGAGTTGGGTGGAAAATGTCCGGCACTGGTTGATTCTCTTACTTCTTCTTGGGACAGAGAGGTGGCTGTGAAACGAGTTTTGGTGGCAAAATTCGGGGCTTGTGGAGGACAAGCATGCATAACAATCGATTATGTTCTTGTAGAGAAGAGTTTCAGTTCTACATTGGTGACATTGATGAAAGATTGTATTAAGAAAATGTTTGGAGAAAATCCTAAAGAGTCGAACACTGTTGCAAGGATAGTTAATGAGAAACATTTCATGAGACTCAAGAATCTTCTCACTGATCCAAGGGTGAAAGAGTCGGTGGTTTTTGGAGGTTCAATGAACGAAAATGACTTATTTATTGAACCCACAATACTGTTGGATCCCCCGCTTGATTCAGCAATCATGGCTGAGGAAATCTTTGGCCCGGTGCTTCCAATTATCACTCTGGAGAAGATTGAGGACAGTGTCGAGTTCATAAGCTCAAGGCCTAAACCATTAGCAATCTATGCCTTCACGAAAAACCCAACTCTGCAGAGAAGAATGGTATCTGAAACATCATCCGGAAGTCTTGTTTTCAACGATGCAATTCTACAGTACATAGCGGATACCCTACCATTTGGAGGAATTGGGGAAAGTGGGTTTGGCAAGTACCATGGAAAGTTCTCCTTTGACGCGTTCAGTCACCCTAAGGTTGTGGCCAGAAGAAGTTACTTCACTGATTTTTGGTACAGATTTCCTCCATGGACTCTTAACAAGCTCCAACTACTTGAGGTGTCTTACAATTTGGATTATCTTGGAATACTTCTAGTTCTGCTTGGCTTAAAGAAGTCAAAACGCTCCTCATTTTATGCTTGTAATTGA 1485 0.431 MEYSVESLVRDLKNVRKYFGSGKTKEASWRESQLKGLHSFLVEREQEILNALKHDLGKHCVEAFRDEVGTLVKTLNYAIKHLKKWMAGEEAKLPKIALLSSAEIVPEPLGLVLIISSWNFPFGLSLEPLIGAVAAGNTAVLKPSEMSPTCSSLLATVLPAYLDNNAIKVIEGGPEVGELLLQQRWDKIFFTGSARVGRIVMSAAAVHLTPVTLELGGKCPALVDSLTSSWDREVAVKRVLVAKFGACGGQACITIDYVLVEKSFSSTLVTLMKDCIKKMFGENPKESNTVARIVNEKHFMRLKNLLTDPRVKESVVFGGSMNENDLFIEPTILLDPPLDSAIMAEEIFGPVLPIITLEKIEDSVEFISSRPKPLAIYAFTKNPTLQRRMVSETSSGSLVFNDAILQYIADTLPFGGIGESGFGKYHGKFSFDAFSHPKVVARRSYFTDFWYRFPPWTLNKLQLLEVSYNLDYLGILLVLLGLKKSKRSSFYACN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00468 494 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 16 438 IPR016162 GO:0016491
Vimu4g00468 494 FunFam Aldehyde dehydrogenase 16 220 - -
Vimu4g00468 494 Pfam Aldehyde dehydrogenase family 18 440 IPR015590 GO:0016491
Vimu4g00468 494 PIRSF ALDH 2 476 IPR012394 GO:0006081
Vimu4g00468 494 FunFam Aldehyde dehydrogenase 217 420 - -
Vimu4g00468 494 SUPERFAMILY ALDH-like 13 457 IPR016161 GO:0016491
Vimu4g00468 494 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 217 420 IPR016163 GO:0016620
Vimu4g00468 494 PANTHER ALDEHYDE DEHYDROGENASE 6 475 IPR012394 GO:0006081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00468 Vimu-Chr4 3376118 3379139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00468 1 484 Aldehyde Dehydrogenase Gene Family AT4G36250 54.132 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00468 K00128 - gmx:100798020 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00468 4 3376118 3379139 Vimu4g00468 4 3376118 3379139 ECH
Vimu4g00468 4 3376118 3379139 Vimu5g02167 5 33074257 33076706 PCT