Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00467 ATGGCTGCAACTCCTTCCAAATGCAAATTGCGATCTCAATCCGATGCTAAATCATCGCCGGCTGTAACCCCAAGCACTCCACAAACCCTACATCTGCGCAGATCCCCACGCGCCAGGTCCATCCTCTTCGATGCTACCAAATCTCCCACTTCACCTTGTGAAATCTCCCTCACAACTCCCAAACGTAGAAATCAACGAATCAGCGATAATGTCGGGCATGATTCTGGCAAAGTCAAAGTCGCCACTAAAGAATCAGCTAAGATGAACGGTGCATCGAAGGAAAAGTATAGGAAGAGCTCAATTGAAGCTTCTCTCGCTCCGGTGACACCGGCTTCTTCGGAGAAGACCTCGAAGAGGAAGAGGGAGGGTGAGAAGAAGGATGTGGTTACCAGAGCTAAAAGGGGGAAATTTGAGAATGAAAAAAGGAGTTCAAAGTTGCCTGCGAGGCGCCAGTATTACAAAAAAGTGATTTTTGATGGGGGGGAGTTTGAAGTGGGGGATGACGTTTACGTCAAGAGGAGAGAAGATGCTGCTTCCGACGATGAAGATCCCGAGGTTGAGGTGTGTAGGATGTGCTTCATGACAAACAGTGAGGTCCTGATTGAGTGTGACGATTGTTTGAATGGGTTTCATTTGAAATGTCTGAGGCCCCCGTTGAAGGATGTTCCTGAAGGGGATTGGATATGTGGGTTCTGTGAGGCTCGGAGGACCGGTAAGGAGGTTCACCTTCCAAAGCCTCCGGTGGGTAAGAAAGTGGCTAGAACTTATAGGGAGAAACTTCTTTCCAGTGATTTGTGGGCTGCTCATATTGAAAGGTTTGTGTCAATTGGGCATTTGGGTAGCATGTGGAAAGAGGTAGACGGCAACTATTGGTGTCGGGTGCGTTGGTATACAATCCCGGAAGAGACTTCTGTAGGGAGGCAGCCTCATAACCTGAGAAGGGAGCTATACCGAACTAACGAGTTTGCTGACATTGAGATGGAATCTGTCCTTAGACATTGCTTTGTTATGACCCCTAAAGAATATGCTAACGCCAGCAATGAGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCAATTGGCATAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGAGACTGACAGTGATGAAGACTGGGGCCTTGACAAGGAATCAGATTCTGATACAGATGAAGATGTTGGATATGAAGAAGAAAACACTAAAGATGGACTATCTCAGCCATCAAAAGGCCACCACCTAGCTGCAAATCTTCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGCACCAAAAGAATTCCACAGCATGTAAGGTCTCACAAACAGACCGATCTTGAGATAGCAAAGGCTACACTGTTGTTGGCATCACTACCTAAATCTTTACCTTGTAGAAACAAAGAAATGGAGGAGATAACTACATTCGTCAAAGGTGCTATTTCTGACAATCAATGTCTGGGAGGTTGCCTCTACATTCATGGAGTTCCCGGAACTGGCAAGACAATGAGTGTACTATCGGTGATGAGGAGCTTGAAGGCAGAAGTTGATGCTGGAAACATCAAACCATACACATTTGTGGAGATTAACGGTTTGAAGTTGGCATCACCAGAAAATATTTATCGGGTCATATACGAGGCACTGAATGGTCATAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTGAATGAGAGATTTGTAGAAGGAAAGAAAATCAGAGACGAGGCTGATCGACCATGTATTTTGCTTATTGATGAACTCGATCTTCTAGTAACCAGAAACCAATCGGTTCTGTATAACATTCTTGATTGGCCTACTAAGCCACATTCCAAACTAATAGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAATTACTTCCTCGTATATCAAGCAGAATGGGAATTCAGAGGCTTTGCTTTGGCCCATATAATTTTCACCAGCTTCAGGAAATCATCTCAAGTCGCCTAAATGGAATTGATGTATTTGAAAAGCAAGCTGTAGAATTTGCTTCAAGAAAGGTTGCAGCTATCTCAGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCAGCTGAAATTGCAGATTATAGAATGAAGAAGTTAATTTCTAATCCTGATCTTGTTACTACAGGAAAGCTACTTGTTGGAATGGTAGATGTTGAAGCAGCCATTCAAGAAATGTTCCAAGCACCTCATATTCAAATGATGAAAAGCTGTTCCAGATTAAGCAAAATTTTCCTGACAGCTATGGTACACGAGCTTTATAATACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCAATGAGGGTTTCATGCCTATGTATCAGCAACGGAGAAACTTTTCCTGGATACGATACTCTGCTGCAAGTGGGCTGTAAGCTAGGTGAATGCAGGATTATTTTATGTGAAGCAGGCTCCAAGCACAAGTTGCAAAAACTGCAGCTTAATTTTCCTAGTGATGATGTGGCCTTTGCGCTGAGAGACTGCAAAGATCTACCTTGGCTGTCAAAGTATCTAATGTAG 2556 0.4378 MAATPSKCKLRSQSDAKSSPAVTPSTPQTLHLRRSPRARSILFDATKSPTSPCEISLTTPKRRNQRISDNVGHDSGKVKVATKESAKMNGASKEKYRKSSIEASLAPVTPASSEKTSKRKREGEKKDVVTRAKRGKFENEKRSSKLPARRQYYKKVIFDGGEFEVGDDVYVKRREDAASDDEDPEVEVCRMCFMTNSEVLIECDDCLNGFHLKCLRPPLKDVPEGDWICGFCEARRTGKEVHLPKPPVGKKVARTYREKLLSSDLWAAHIERFVSIGHLGSMWKEVDGNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNEFADIEMESVLRHCFVMTPKEYANASNEGDDVFLCEYEYDINWHSFKRLADIDNERENGEETDSDEDWGLDKESDSDTDEDVGYEEENTKDGLSQPSKGHHLAANLHKGRFFGLQKIGTKRIPQHVRSHKQTDLEIAKATLLLASLPKSLPCRNKEMEEITTFVKGAISDNQCLGGCLYIHGVPGTGKTMSVLSVMRSLKAEVDAGNIKPYTFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKIRDEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNFHQLQEIISSRLNGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKKLISNPDLVTTGKLLVGMVDVEAAIQEMFQAPHIQMMKSCSRLSKIFLTAMVHELYNTGMGETTFEKLAMRVSCLCISNGETFPGYDTLLQVGCKLGECRIILCEAGSKHKLQKLQLNFPSDDVAFALRDCKDLPWLSKYLM 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00467 851 SMART AAA_5 494 648 IPR003593 GO:0016887
Vimu4g00467 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 715 IPR027417 -
Vimu4g00467 851 Gene3D - 272 452 IPR043151 -
Vimu4g00467 851 MobiDBLite consensus disorder prediction 114 144 - -
Vimu4g00467 851 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 302 845 - -
Vimu4g00467 851 SMART BAH_4 161 370 IPR001025 GO:0003682
Vimu4g00467 851 Pfam ATPase family associated with various cellular activities (AAA) 499 644 IPR003959 GO:0005524|GO:0016887
Vimu4g00467 851 MobiDBLite consensus disorder prediction 7 33 - -
Vimu4g00467 851 MobiDBLite consensus disorder prediction 66 81 - -
Vimu4g00467 851 MobiDBLite consensus disorder prediction 376 406 - -
Vimu4g00467 851 MobiDBLite consensus disorder prediction 44 65 - -
Vimu4g00467 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 243 IPR013083 -
Vimu4g00467 851 FunFam Origin recognition complex subunit 1 184 251 - -
Vimu4g00467 851 FunFam Origin recognition complex subunit 1 451 650 - -
Vimu4g00467 851 Pfam AAA lid domain 672 705 IPR041083 -
Vimu4g00467 851 Pfam PHD-finger 189 234 IPR019787 -
Vimu4g00467 851 ProSitePatterns Zinc finger PHD-type signature. 189 232 IPR019786 -
Vimu4g00467 851 ProSiteProfiles Zinc finger PHD-type profile. 186 235 IPR019787 -
Vimu4g00467 851 FunFam Origin recognition complex subunit 1 252 453 - -
Vimu4g00467 851 Gene3D - 453 648 IPR027417 -
Vimu4g00467 851 Gene3D - 649 739 - -
Vimu4g00467 851 SUPERFAMILY FYVE/PHD zinc finger 176 242 IPR011011 -
Vimu4g00467 851 ProSiteProfiles BAH domain profile. 252 370 IPR001025 GO:0003682
Vimu4g00467 851 MobiDBLite consensus disorder prediction 1 144 - -
Vimu4g00467 851 Pfam BAH domain 163 368 IPR001025 GO:0003682
Vimu4g00467 851 SMART PHD_3 188 233 IPR001965 -
Vimu4g00467 851 FunFam Origin recognition complex subunit 1 647 739 - -
Vimu4g00467 851 MobiDBLite consensus disorder prediction 376 418 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00467 4 850 Core DNA Replication Machinery Family AT4G14700 61.324 0.0 1000
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vimu4g00467 BAH 3.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00467 K02603 - gmx:100798547 1447.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00467 4 3359893 3366763 Vimu4g00467 4 3359893 3366763 ECH