Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00465 GTCCTATCGGAGAGGAGACAGAGGAGAGGAACTATGGCGGAGGCGGCGGCGGCGTCGCAGGGGTACCGCCAACCTTCGACAATCGAGGAAGTGAGAACCCTATGGATTGGGGATTTGCAGTATTGGGTGGACGAGACGTACCTCGGTCACTGTTTCGCCCACATCGGCGAGGTTCTTTCCATCAAGATCATCCGCAACAAGATGACGGGCCAACCGGAGGGTTACGGTTTCGTCGAGTTTGCCTCCCACGAGACAGCGGAGCGCGTGCTCCAGACCTACAACGGCACATTTATGCCCGGCACCGAACAGACCTTCAGACTCAATTGGGCCTCTTTCGGCATCGGTGAGCGCAGGCCCGACGCGGGCCCAGAACACTCCGTCTTCGTGGGCGACCTTGCACCCGACGTAACTGACTATCTTCTCCAAGAAACCTTCCGGGCCCACTACCACTCCGTTCGCGGCGCCAAGGTCATCACGGATCCCAACACGGGCCGCTCCAAGGGCTACGGCTTCGTCAAATTCTCCGACGAGAACGAACGCAACCGCTCCATGAGCGAGATGAACGGGGTTTATTGCTCCACTAGAGCCATGCGCATTAGCGCCGCCACGCCCAAGAAAAGCACCAGTGGTAACGCCGCGCCCACCAAACCGGCGTACCAGACTCCGTACACTGCGCCGGTTCAAGTTCAACCTTCGGAGTATGATGTTAATAACACTACCATTTTTGTTGGTAATTTGGATCCTAATGTGTCTGAGGAGGAATTGAAGCAAAACTTTCTTGAATTTGGAGAAATTATCTCTGTTAAAATTCCGCCGGGCAAGGGATGTGGCTTTGTTCAATTTAGGACAAGAGCATCAGCTGAAGAAGTTATTCAGAATACGCAGGGAAAGATCATAGGACAACAAGTGGTGAGGATTTCTTGGGGTAGGACCCTAGCAGCTAGACAGGACTTACATGGTAGGTGGGGACAACAGATGGATCCAAGTCAATGGAATGCCTACAATGGGTATGGGCAGGGTTATGAAACATATGGTTATGGGGCTGCTCAAGACCCTTCATTGTATACATATGGTGCATATGCTGGCTATCAACAACAGTATCCCCAACAGGTTGAAGGTGCTCAAGACCCAACTGGTATGCCTGCACCTTCCATGGATCCAAGGGAGGAATTGTTAAATGATGCATACGTCAAAGTACATGGAAATGCCATTTTAGGGCGATCCCTATGGCAAAAATCCTCTTCATCATCCTTACCAAAAACTTAA 1266 0.519 VLSERRQRRGTMAEAAAASQGYRQPSTIEEVRTLWIGDLQYWVDETYLGHCFAHIGEVLSIKIIRNKMTGQPEGYGFVEFASHETAERVLQTYNGTFMPGTEQTFRLNWASFGIGERRPDAGPEHSVFVGDLAPDVTDYLLQETFRAHYHSVRGAKVITDPNTGRSKGYGFVKFSDENERNRSMSEMNGVYCSTRAMRISAATPKKSTSGNAAPTKPAYQTPYTAPVQVQPSEYDVNNTTIFVGNLDPNVSEEELKQNFLEFGEIISVKIPPGKGCGFVQFRTRASAEEVIQNTQGKIIGQQVVRISWGRTLAARQDLHGRWGQQMDPSQWNAYNGYGQGYETYGYGAAQDPSLYTYGAYAGYQQQYPQQVEGAQDPTGMPAPSMDPREELLNDAYVKVHGNAILGRSLWQKSSSSSLPKT 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00465 421 Gene3D - 224 316 IPR012677 -
Vimu4g00465 421 FunFam Polyadenylate-binding protein RBP47B 113 214 - -
Vimu4g00465 421 Gene3D - 114 216 IPR012677 -
Vimu4g00465 421 CDD RRM2_SECp43_like 124 203 - -
Vimu4g00465 421 CDD RRM1_SECp43_like 33 113 - -
Vimu4g00465 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 204 IPR000504 GO:0003723
Vimu4g00465 421 SUPERFAMILY RNA-binding domain, RBD 219 339 IPR035979 GO:0003676
Vimu4g00465 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 191 IPR000504 GO:0003723
Vimu4g00465 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 304 IPR000504 GO:0003723
Vimu4g00465 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 102 IPR000504 GO:0003723
Vimu4g00465 421 SUPERFAMILY RNA-binding domain, RBD 23 100 IPR035979 GO:0003676
Vimu4g00465 421 SUPERFAMILY RNA-binding domain, RBD 118 209 IPR035979 GO:0003676
Vimu4g00465 421 FunFam polyadenylate-binding protein RBP45 223 319 - -
Vimu4g00465 421 FunFam Polyadenylate-binding protein RBP47B 31 111 - -
Vimu4g00465 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 311 IPR000504 GO:0003723
Vimu4g00465 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 27 314 - -
Vimu4g00465 421 SMART rrm1_1 126 200 IPR000504 GO:0003723
Vimu4g00465 421 SMART rrm1_1 240 307 IPR000504 GO:0003723
Vimu4g00465 421 SMART rrm1_1 33 108 IPR000504 GO:0003723
Vimu4g00465 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 112 IPR000504 GO:0003723
Vimu4g00465 421 Gene3D - 31 111 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00465 Vimu-Chr4 3355846 3358544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00465 23 384 Eukaryotic Initiation Factors Gene Family AT1G49760 26.316 1.11e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00465 - - gmx:100799421 611.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00465 4 3355846 3358544 Vimu4g00465 4 3355846 3358544 ECH
Vimu4g00465 4 3355846 3358544 Vimu5g02168 5 33078207 33082983 PCT