Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00458 ATGATAACGATTCGAGACTCCCTAACTTCAGGAGCCTTTTATAGTATTTCTAAGCATTCAACTACTCAAGCAATGATGATTGATAAACAACAGCAGCACCCAAGGATCGAGCAAAAGCTTGCTGGGCAGCTTCACTTGAGATCCAACTCCAACCTTTCCCCACATGTTGGAACTTGTTACGGAGGTTTGAAAAGGCTAGCTCTGTTTCAGCAGCGATTCTCACTAGCAAATTATTCAAATGCAGGGTTACAGTTCCCTGTCATGCCTGCATGCAAACCCACAAACTACATGCATTCTGCAGGTTCACCAGTGTTCATCCCATCGCCTTCGGAGAAAAACTGGGGAAGGTTTGCCACTGATTTTCTCATGGGTGGAGTTTCTGCGGCAGTGTCCAAGAGTGCAGCTGCTCCCATTGAGCGTGTAAAGCTTCTCATTCAAAATCAGGATGAGATGATCAAAGCGGGCAGGCTCTCTGAACCCTACAAGGGCATTGGAGATTGCTTTGGAAGAACAATCAAAGACGAAGGGTTTGTTTCATTGTGGAGAGGGAACACTGCTAATGTTATCCGTTACTTCCCAACACAGGCCTTGAATTTTGCATTTAAAGACTACTTTAAGAAGCTGTTCAACTTCAAGAAAGACAGGGATGGATACTGGAAATGGTTTGCAGGGAACGTAGCATCTGGTGGTGCAGCAGGAGCTGTGTCTTCGGTGTTTGTATATTCATTGGATTACGCTCGAACCCGCCTTGCCAATGATGCCAAGGCTGGAAAGAAGGGTGGAGAGAGGCAATTCAATGGCTTGATAGATGTGTACAGGAAGACTCTTGAATCAGACGGTGTTGCTGGCCTCTACCGTGGCTTCAACGTCTCTTGCGTTGGAATCATTGTTTACCGTGGTTTATATTTTGGCATGTATGATTCTCTGAAACCAGTGGTCTTGGTGGGAACTTTGCAGGATAGTTTCTTGGCTAGCTTTGCTCTGGGGTGGCTGGTTACTATCAGTGCAAGCATTGCCTCGTACCCCTTGGATACGGTTCGCAGAAGAATGATGATGACATCGGGTGAAGCCGTGAAGTACAAAAGCTCTTTGGATGCATTCTCGCAAATCGTGAAGAATGAAGGTTCAAAATCTCTCTTCAAGGGTGCCGGTGCAAACATCCTTCGTGCAGTTGCAGGTGCTGGTGTGCTTGCTGGTTATGACAAACTTCAGTTACTTGTTCTTGGAAAGAAGTATGGTTCTGGTGGGGCTTGA 1254 0.4617 MITIRDSLTSGAFYSISKHSTTQAMMIDKQQQHPRIEQKLAGQLHLRSNSNLSPHVGTCYGGLKRLALFQQRFSLANYSNAGLQFPVMPACKPTNYMHSAGSPVFIPSPSEKNWGRFATDFLMGGVSAAVSKSAAAPIERVKLLIQNQDEMIKAGRLSEPYKGIGDCFGRTIKDEGFVSLWRGNTANVIRYFPTQALNFAFKDYFKKLFNFKKDRDGYWKWFAGNVASGGAAGAVSSVFVYSLDYARTRLANDAKAGKKGGERQFNGLIDVYRKTLESDGVAGLYRGFNVSCVGIIVYRGLYFGMYDSLKPVVLVGTLQDSFLASFALGWLVTISASIASYPLDTVRRRMMMTSGEAVKYKSSLDAFSQIVKNEGSKSLFKGAGANILRAVAGAGVLAGYDKLQLLVLGKKYGSGGA 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00458 417 Pfam Mitochondrial carrier protein 321 407 IPR018108 -
Vimu4g00458 417 Pfam Mitochondrial carrier protein 114 212 IPR018108 -
Vimu4g00458 417 Pfam Mitochondrial carrier protein 219 312 IPR018108 -
Vimu4g00458 417 PRINTS Mitochondrial carrier protein signature 329 351 IPR002067 GO:0055085
Vimu4g00458 417 PRINTS Mitochondrial carrier protein signature 120 133 IPR002067 GO:0055085
Vimu4g00458 417 PRINTS Mitochondrial carrier protein signature 235 253 IPR002067 GO:0055085
Vimu4g00458 417 PRINTS Mitochondrial carrier protein signature 285 303 IPR002067 GO:0055085
Vimu4g00458 417 PRINTS Mitochondrial carrier protein signature 133 147 IPR002067 GO:0055085
Vimu4g00458 417 PRINTS Mitochondrial carrier protein signature 183 203 IPR002067 GO:0055085
Vimu4g00458 417 FunFam ADP,ATP carrier protein, mitochondrial 118 413 - -
Vimu4g00458 417 ProSiteProfiles Solute carrier (Solcar) repeat profile. 115 208 IPR018108 -
Vimu4g00458 417 PRINTS Adenine nucleotide translocator signature 325 341 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g00458 417 PRINTS Adenine nucleotide translocator signature 117 129 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g00458 417 PRINTS Adenine nucleotide translocator signature 161 182 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g00458 417 PRINTS Adenine nucleotide translocator signature 194 206 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g00458 417 PRINTS Adenine nucleotide translocator signature 220 233 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g00458 417 ProSiteProfiles Solute carrier (Solcar) repeat profile. 220 312 IPR018108 -
Vimu4g00458 417 Gene3D Mitochondrial carrier domain 118 413 IPR023395 -
Vimu4g00458 417 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 110 416 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vimu4g00458 417 SUPERFAMILY Mitochondrial carrier 115 402 IPR023395 -
Vimu4g00458 417 ProSiteProfiles Solute carrier (Solcar) repeat profile. 320 406 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00458 Vimu-Chr4 3311637 3314167 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00458 29 417 Antiporters AT5G13490 74.615 0.0 575
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00458 K05863 - gmx:100800843 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00458 4 3311637 3314167 Vimu4g00458 4 3311637 3314167 ECH