Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00457 ATGAATAGTTCGGGTTTGGGTGGTGGCTTTTTGTCTGGTCCCAGCGGGGCGATTTTGGACTTGGAATCTTCATTTCATAGACATCAACAGACTCAACTTGGTCATCCATCTATTACTGGTCAACAACACTTGAATATCATGGGTGGTCTCGAAAGTGATCACCCCATTGGCCTAATTGAAGTGAAAAATTTGAATGCCGGGTTGAATTTTGGTAAAGGAAAGGCAATTGCTCCTTCCAATAGTAATGAGTTGAGTGAGGAGGACGAACCTAGCTATGCAGAAGAAGGGAATTGTGAGAACCTGGATGGTGGGAAGAGCAAAAAGGGATCTCCTTGGCAGCGAATGAAGTGGACAGATAATGTGGTTAGGCTTCTTATAACAGTGGTGAGTTGTGTCGGTGATGATGGCACTATTGGGGGCATGGATGGTCATAAAAGGAAACCTGGGGTTTTACAGAAGAAAGGCAAGTGGAAAACAGTCTCCAAGATAATGATAAGCAAGGGTTGCCATGTGTCGCCACAGCAGTGTGAGGACAAGTTCAATGACTTAAATAAGAGATACAAGAGGTTAAATGACATACTTGGAAGGGGAACTTGTTGTCAAGTGGTTGAGAATCCTGCATTAATGGATTCAATACCTAACCTGTCAACTAAGATGAAGGATGACGTTAGGAAGATCCTGAGCTCAAAACATTTGTTTTATAAGGAGATGTGTGCCTACCATAACGGGCAAAGAATACCAAATTGTAATGAACTTGATTTGCAGGGTTACTCTATGGAGCATGGGAAGGACTCAAGAAGAGAAAATAATGGATCTGAAGATGAAGATGAAGATAACAATGATAGCGAGGATGATGAGTTGGAAGATGAAATTAATATTAATGCACACGAGGATGGAGGGAGGATGCAGGAACTCTGTGAGAGAAATATATTAAGTGAGGAGGATGGCCATTTTGGCCCACAAACTTCTAGGATGGACAAATTTGAAGTTGAAATGGCAAGAGTTTTTCAAGACCCCGGAAAGTCATTACGCGAACAAAGAGAGTGGATTAAAATCCAGATGTTGCAGCTTCAAGAGCAAAATATCAGCTACCAAGCCCAAGCTCTTGAACTGGAGAAACAACGGCTTAAGTGGTTAAGATACTGCAGCAAGAAGGACAGAGAGCTGGAGAGACTGAGATTGGAGAACAAAAGAATGAAATTAGAAAATGAGCGCAGGATCTTGAAACTGAAACAAAAAGAGCTAGAGACAGATTTCAGTACATCTGAAATGTCTTTAGACCCTGCCTCTATAGGAATCAACCGGCCGCAGGGGAGGGAGCATATCAGCTTAGGCAGACAACAGTAG 1347 0.4246 MNSSGLGGGFLSGPSGAILDLESSFHRHQQTQLGHPSITGQQHLNIMGGLESDHPIGLIEVKNLNAGLNFGKGKAIAPSNSNELSEEDEPSYAEEGNCENLDGGKSKKGSPWQRMKWTDNVVRLLITVVSCVGDDGTIGGMDGHKRKPGVLQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTCCQVVENPALMDSIPNLSTKMKDDVRKILSSKHLFYKEMCAYHNGQRIPNCNELDLQGYSMEHGKDSRRENNGSEDEDEDNNDSEDDELEDEININAHEDGGRMQELCERNILSEEDGHFGPQTSRMDKFEVEMARVFQDPGKSLREQREWIKIQMLQLQEQNISYQAQALELEKQRLKWLRYCSKKDRELERLRLENKRMKLENERRILKLKQKELETDFSTSEMSLDPASIGINRPQGREHISLGRQQ 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00457 448 Gene3D - 117 189 - -
Vimu4g00457 448 PANTHER F16F4.11 PROTEIN-RELATED 1 421 - -
Vimu4g00457 448 MobiDBLite consensus disorder prediction 261 287 - -
Vimu4g00457 448 MobiDBLite consensus disorder prediction 419 448 - -
Vimu4g00457 448 Coils Coil 354 374 - -
Vimu4g00457 448 Pfam Myb/SANT-like DNA-binding domain 114 239 IPR044822 -
Vimu4g00457 448 Coils Coil 382 418 - -
Vimu4g00457 448 MobiDBLite consensus disorder prediction 76 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00457 Vimu-Chr4 3308697 3310043 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Vimu4g00457 Myb_DNA-bind_4 3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00457 - - gmx:100798932 786.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00457 4 3308697 3310043 Vimu4g00457 4 3308697 3310043 ECH