Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00453 ATGACTCACCCCTTTTGCTCCAACGACTTCAATGCCTGGTTTGACCTCAATTCTCCATTTTCTTCATCATCCCATTTTCCTTCTCCCCCCAAAGAAGCTCTTCCTTTCCTTAACCTAAGCCTTGCAAGGGCTGAAGATCTTGAATCTTCCTTCAGTGCCATGAAAGTCAACAGAGAGAAGGAGAGAGAACCAAGCATATGCATATCGTCTAATAATAATAATAACTCTTTGGATGATGAAACTGTCACGGTGGCTTTGCACTTAGGGCTTCCAACCACTACTGCTTCTGCTGATTCAACTTCAAACACATACTCAGACAGAGAAAAAGCCATTGCTTCTGAGTATTCTCCTACTAGAATTAACAAGGGTCAGTATTGGATTCCTACCCCTGCTCAAATTCTCATCGGTCCAACACAGTTCTCCTGCCCCCTTTGTTTCAAGACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGTCCAGAGTCTCTGAGGGGAACTCAACCAACAGCAATGCTTAGACTCCCTTGCTATTGTTGTGCACCTGAATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTTAGAACCCTCCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCTTTCATGTGCAGAAAATGCTGCAAAGCTTTTGCTGTTAGAGGTGATTGGAGGACCCATGAGAAGAACTGTGGAAAGCTCTGGTATTGCTCTTGTGGCTCTGATTTCAAACACAAAAGATCCCTCAAAGATCATATCAAGGCTTTTGGGAATGGACACAAAGCTTATGGAATCGACTGTTTTGATCACGATGATGAAGCTGCCTCTGAAATTGAGCAAGAAAATGTCAATGAATCTTTACTTTCAATGTGTCACAATTGA 927 0.425 MTHPFCSNDFNAWFDLNSPFSSSSHFPSPPKEALPFLNLSLARAEDLESSFSAMKVNREKEREPSICISSNNNNNSLDDETVTVALHLGLPTTTASADSTSNTYSDREKAIASEYSPTRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPECKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCFDHDDEAASEIEQENVNESLLSMCHN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00453 308 PANTHER ZINC FINGER PROTEIN WIP2 25 297 IPR043584 GO:0003700|GO:0010468
Vimu4g00453 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 140 167 IPR013087 -
Vimu4g00453 308 ProSitePatterns Zinc finger C2H2 type domain signature. 142 162 IPR013087 -
Vimu4g00453 308 Gene3D Classic Zinc Finger 139 162 - -
Vimu4g00453 308 Gene3D Classic Zinc Finger 221 301 - -
Vimu4g00453 308 FunFam Zinc finger protein WIP2 193 275 - -
Vimu4g00453 308 SUPERFAMILY beta-beta-alpha zinc fingers 206 244 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00453 Vimu-Chr4 3286304 3288174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00453 82 304 C2H2 Transcription Factor Family AT3G57670 70.115 5.47e-129 371
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g00453 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00453 - - vum:124825208 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00453 4 3286304 3288174 Vimu4g00453 4 3286304 3288174 ECH
Vimu6g03002 6 26512269 26514577 Vimu4g00453 4 3286304 3288174 ECH
Vimu3g00372 3 3542631 3544827 Vimu4g00453 4 3286304 3288174 ECH
Vimu4g00453 4 3286304 3288174 Vimu5g02180 5 33140364 33142515 PCT