Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00451 ATGGCGGAGGAACTTGACCTCGACAACCTTAAGGCACTGAAAGTTTTAGGCAAAGGAGCCATGGGCACTGTGTTTCTCGTGCAACACAGCTCCGGCCACGTGGCGCTCAAAGTGGTAGACAAATCATCATCCCTCCAAGACGGTGCTCGCCGCGCCCACTGGGAAATCACTGTTCTCTCTCGCTTATCCCACCCCTTCCTCCCCACCCTACTGGGTTCCTTCGAGTCCAACAACTTAATGGGCTGGGCCGTCCCCTACTGCCCTGGCGGCGACCTCAACCACCTCCGCTATCGCCAAACGGATCACATATTCTCCCCCGCCGTCGTCCGCTTCTACCTCGCCGAGATCCTCTGTGCTCTCCACCACCTTCACTCCATGCACATCGTGTACCGCGACCTCAAACCCGAAAACGTCCTCATTCAACAATCCGGCCACGTCACTCTCACCGACTTCGACCTCTCCCGAACTCTCTCTCCCATCAAAACCAACACCTCTCCCTCCAACTCCCACATTCCTGACACCGCCACGCGCAAGCCCCGCCGCAATTTCCGCTGGGCCCCACTCACGAAGATCCCCAAGTCCGCCCGAGTCACCCCCGCCGTTCGCCGCGCCGCCCCAAGCTTCGAGCGCTCGAACTCGTTCGTGGGCACCGAGGAGTACATCGCACCGGAGGTCCTCCGAGGCGAGGGGCACGGCTTCGCCGTTGACTGGTGGGCCCTCGGCGTCCTCGCCCACGAGATGGTGTACGGAACGACGCCGTTCAAGGGGAGGAATCGCAAGGAAACGTTTCGCAACGTGTTGTTGAAGACGCCCCAGTTTGTTGGGAAGAAAACAGCGTTGACGGACCTAATCTCTCGGTTGCTAGAAAAGGACCCCTCCAAGCGTTTGGGTTGTGTTCGCGGCGCCACCGAGATCAAGGAGCACGAGTTCTTCAGAGGGGTTAAGTGGGACCTACTAACGGAGGTTGTGCGGCCGCCGTTTATTCCTTCAAGAGAAGAGGTTACGAAGCCTTTCGCCGACGGACTTGACGTAAGGGGATACTTTCAGAGCCTGAAATCTCCACCGTCTTTGCCCCCTTCGCCGTTACGGTCACCGTCGTGTGAGTTTCGGAAAAACGTTTCTTTACCGGAATTCTGA 1137 0.5831 MAEELDLDNLKALKVLGKGAMGTVFLVQHSSGHVALKVVDKSSSLQDGARRAHWEITVLSRLSHPFLPTLLGSFESNNLMGWAVPYCPGGDLNHLRYRQTDHIFSPAVVRFYLAEILCALHHLHSMHIVYRDLKPENVLIQQSGHVTLTDFDLSRTLSPIKTNTSPSNSHIPDTATRKPRRNFRWAPLTKIPKSARVTPAVRRAAPSFERSNSFVGTEEYIAPEVLRGEGHGFAVDWWALGVLAHEMVYGTTPFKGRNRKETFRNVLLKTPQFVGKKTALTDLISRLLEKDPSKRLGCVRGATEIKEHEFFRGVKWDLLTEVVRPPFIPSREEVTKPFADGLDVRGYFQSLKSPPSLPPSPLRSPSCEFRKNVSLPEF 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00451 378 FunFam Serine/threonine-protein kinase OXI1 209 330 - -
Vimu4g00451 378 PANTHER FLIPPASE KINASE 1-RELATED 4 332 - -
Vimu4g00451 378 ProSiteProfiles Protein kinase domain profile. 10 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00451 378 Gene3D Transferase(Phosphotransferase) domain 1 209 330 - -
Vimu4g00451 378 SMART serkin_6 10 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00451 378 ProSitePatterns Protein kinases ATP-binding region signature. 16 37 IPR017441 GO:0005524
Vimu4g00451 378 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Vimu4g00451 378 Gene3D Transferase(Phosphotransferase) domain 1 91 160 - -
Vimu4g00451 378 Pfam Protein kinase domain 12 162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00451 378 Pfam Protein kinase domain 211 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00451 378 FunFam Serine/threonine-protein kinase OXI1 91 159 - -
Vimu4g00451 378 Gene3D Phosphorylase Kinase; domain 1 10 90 - -
Vimu4g00451 378 SUPERFAMILY Protein kinase-like (PK-like) 7 360 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00451 Vimu-Chr4 3274087 3275223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00451 3 378 AGC Kinase Gene Family AT3G20830 58.809 9.44e-146 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vimu4g00451 Pkinase 6.7e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00451 - - gmx:100802613 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00451 4 3274087 3275223 Vimu4g00451 4 3274087 3275223 ECH
Vimu4g00451 4 3274087 3275223 Vimu5g02190 5 33205464 33207075 PCT