Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00447 ATGGATTCTTCTGTCGTTGTGGGTAGCTCAATTTCCGAGCCTCATCATGAGATGGAATTTGAATCTCATGAAGCTGCATATGCATTTTACAAAGAATATGCTAAGTCTGCAGGGTTTGGCACTGCTAAGCTGAGCAGCCGGCGATCTAGGGCATCCAAAGAATTTATTGATGCCAAATTTTCATGTATAAGATATGGTAATAAGCAGCAATCTGATGATGCAATTAATCCACGCCCTTCTCCAAAAATTGGTTGTAAAGCTAGTATGCATGTAAAGAGAAGGCAAGATGGTAAATGGTATGTCTACAGCTTCGTGAAGGAGCATAATCACGAACTTTTACCAGCTCAAGCTCATTTTTTCCGGAGTCACAGGAGTTCTGATCCACTAGGTAATGATGTTCGAGTGCGTAGGCGAAAATCCTCAAATGCAGTTTCTAAATTATTTAGTGCATATCAGAATGTCGATTGCTTAGAAAACTTTGTGAAACATCAACATGATAAAGGACGGAGTTTGGTTCTAGAAGCAGGACATGCTCAATTACTTCTTGAACTCTTTATGCACATGCAAGAAGAGAACCCAAAATTCTTCTATGCAGTTGATTTGAATGAAGAACATCGACTAAGAAATGTGTTCTGGGTTGATGCTAAAGGCTTGGAAGATTTTACGTACTTTTCTGATGTTGTCTCTTTTGACACAACATATTTTACTAGCAAATATAAAATACCGTTGGTACTTTTCCTTGGAGTAAACCATCACATTCAACCAACATTGCTTGGTTGTGCATTGATTGCTGACGAGACAATATTTACCTATGCTTGGTTACTGCAAACATGGCTGATAGCAATGGGGGAGCGAGCACCACAAGTGCTTCTGACTGACCAAAATGACGCTATTAAAGCAGCTGTTGCCACTTTTCTTCCAGGAACACGCCACTGTTTTTGTTTGTGGCATATTTTGGAAAAGATACCAAAGCAACTACAAATTTTAGGCGCATGGCATGATAGCTTTATGGAAAAATTTAACAAATGTATACACAAATCATGGAATGAGGAGCAATTTGAAAAGAGATGGTGGAAGTTGGTTGACAGCTTTAGCCTTGGAGATGTTGAGTGGGTTCGATCCCTATATGATGACCGCACATATTGGGTGCCAACATTTATGAAAGATATTTCCTTTGCTGGCTTGTCTACTAGTTCTCGTTCTGAATGTTTAAATTCATTGGTTGACAAGTATATCCATGTTGATTCTTCTTTGAGAGAATTCATAGAACAATATAGAGTGATTCTTGAAGACAGGCATGAAGAGGAAGCCAAAGCAAATTTTGATGCCTGGCATGAAACACCTGACCTGAAGTCTCCTTCCCCTTTTGAAAAACAAATGCTGTTAGTCTACACACATGAAATTTTTAGAAAGTTCCAGGTTGAGGTGTTGGGTGCAGCTGCTTGCCATCTTAAGAAAGAAAGTGACGGCGTGACTACTGCTTATACTGTGAAAGATTTTGAAAATAATCAAAACTATTTGGTAGAATGGAACACGTCCAGCTCAGATATATGCTGTTCATGTCGTTTGTTTGAGTATAAAGGTTATCTCTGCAGACATGCTATTGTTGTTCTACAAATGTCTGGTGTTTTCAGCATTCCACCAAAGTATATATTGAAAAGATGGACGAATGCTGCTATGAGCAGGCATCCTATTGGTGAAAAGTTGGAAGAGGTTCAATCAAAGGTGCGGAGATTCAATGATTTGTGTAGGCGGGCCATTATATTAGGTGAAGAAGGTTCTTTATCACAGGAAAGTTACTACATGGCCTTAGGTGCCATCAGTGAGGCACTAAAACAATGTGTAAATTTTAGCAACCCTGTTGAGAATGGTATGAGACCTGATTCCTCAGGTACCCATGTTTGTAATGTTGAAGAAGAATATCAATCTATTATTACATCTAACAATAAGGCCCCTGGTCCGAAACTGAATATGGGAAAGAAAGCTGTGAGAACTGGTGTAGCTTGTAGGAATCAAGGAAGTATTGAAAACAGTGGAGGCGATAAAGGAAAGGTATCTCTCGTTGAAGCAGGTAGTGGGAAAGATGGTTTTCAACATGTGGAGCTTACTGATCCGAGATCACATGGTGTCATGCCAATGCAGTTTCACAACGTGGTACCTTCTCTGTTCCATAATGTTTCGGCCCCATTTCACACTACACCTTCACCTCATATGCATGAGAATCGTTAG 2229 0.397 MDSSVVVGSSISEPHHEMEFESHEAAYAFYKEYAKSAGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDAINPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLPAQAHFFRSHRSSDPLGNDVRVRRRKSSNAVSKLFSAYQNVDCLENFVKHQHDKGRSLVLEAGHAQLLLELFMHMQEENPKFFYAVDLNEEHRLRNVFWVDAKGLEDFTYFSDVVSFDTTYFTSKYKIPLVLFLGVNHHIQPTLLGCALIADETIFTYAWLLQTWLIAMGERAPQVLLTDQNDAIKAAVATFLPGTRHCFCLWHILEKIPKQLQILGAWHDSFMEKFNKCIHKSWNEEQFEKRWWKLVDSFSLGDVEWVRSLYDDRTYWVPTFMKDISFAGLSTSSRSECLNSLVDKYIHVDSSLREFIEQYRVILEDRHEEEAKANFDAWHETPDLKSPSPFEKQMLLVYTHEIFRKFQVEVLGAAACHLKKESDGVTTAYTVKDFENNQNYLVEWNTSSSDICCSCRLFEYKGYLCRHAIVVLQMSGVFSIPPKYILKRWTNAAMSRHPIGEKLEEVQSKVRRFNDLCRRAIILGEEGSLSQESYYMALGAISEALKQCVNFSNPVENGMRPDSSGTHVCNVEEEYQSIITSNNKAPGPKLNMGKKAVRTGVACRNQGSIENSGGDKGKVSLVEAGSGKDGFQHVELTDPRSHGVMPMQFHNVVPSLFHNVSAPFHTTPSPHMHENR 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00447 742 SMART 26again6 517 544 IPR006564 GO:0008270
Vimu4g00447 742 Pfam MULE transposase domain 227 320 IPR018289 -
Vimu4g00447 742 ProSiteProfiles Zinc finger SWIM-type profile. 506 542 IPR007527 GO:0008270
Vimu4g00447 742 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 8 616 IPR031052 GO:0006355
Vimu4g00447 742 Pfam SWIM zinc finger 511 540 IPR007527 GO:0008270
Vimu4g00447 742 Pfam FAR1 DNA-binding domain 29 114 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00447 Vimu-Chr4 3245526 3248760 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu4g00447 MULE 5.6e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00447 - - gmx:100805273 1374.38