Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00435 ATGGATGCAGAAAAATCAGTAGAGGATCGATTCTCCAAGCTTCATCCTTCCATGCCAGTAAACACCAAAATTGGAATAGTGGGTGCTGGTCCAAGTGGCTTATCAGCTGCTTATGCACTGGTCAGGCTTGGATATAATAATGTCACTGTCTTAGAGAAACATCATTCAGTTGGGGGCATGTGTGAGTCAGTAGAAATTGAAGGAAGGGTTTATGATCTAGGTGGCCAAGTTCTGGCTGCAAGCAGTGCTCCAGTCATCTTTCACTTGGCAAAAGAGACAGGTTCTCCACTAGAAGAAATGGACTCCCACAAGCTTGCTGTTATTGACAGTTCCTCAGGAAAATACCAAGATATCAAAGTTGCTGATGATTATGTATCTGTCATGTCACTTACATTAGCAATCCAAGAAAAGGTGAAGCATTCGGGTCGTTTTGGGGTTCATGCTGTCAGTGAAGTTGCTTCAGACTTAGCTCCAGAATATCTTGAGCAACATGGACTTAAATCTATCCCAAAATCTGTGGCTTATGGTTACACTGCTTCAGGATACGGGTTTGTTCAAGATATGCCTTATGCCTACCTTCATGAATTTACCAGAACTTCAATGGCTGGAAAAATTCGACGATTTAAAGGTGGATATACGAGTCTTTGGCAGAGGATTGCTGAATCACTTCCTATAAAACTTCACTGTAACACTGAAGTGCTCACTATCAAGAGGAACTCTGATTGTGTGACCGTTAATGTCAAGTGCTCGAATGAAATTGAAACTATGGAATTTGATAAGATCATAATCTCCGGCAACTTCCCACTAAAATATGGAAGAACTTATAGATCAGTGCCTTCAACAAACTCAGAGTGCGAATCAGAAGTCATGGATGCAAGTGAAGTTGAAAAGGATTTATTCAGCAAAGTTGAAACAAATGACTACTACACAACTGTTTTAAAGATAAAGGGACTGGAACACATGCCTGTTGGATTTTATTATTTTAAAGAATATATGGAAGATCCTAGCACAATTGGAAATCCAGTTGCCATGCAGAAGTTTTATGCAGACAGTAATATATTCTTGTTCTGGTCCTATGGCAACTCTGCCGATATTAAGGGACCAACGGTCAATGAGCTTGCAATCAAATCAGTAAAGTCCATGGGAGGAGAAGTTGAGAATTTCATTCTTCAACGTCGTTTTAAGTACTTTCCTCACGTCAGCAGCCAAGATATGAGAAACGGATTCTATGAAAAGTTGGAGTCGGAGCTTCAAGGTTCAAGAAATACTTATTATGTCGGTGGGCTTATGGCGTTTGAGCTTACAGAGAGAAATTCATCTTATGCCATGGCTTTGATCTGCAAGAAGTTTTCAAATAGCAGTGATTTGCCATTGTTTCCTTACACTAAGAGTTTGTTTCCCTTGCAAACTGAGTTCCAGAAAAAGGAGCCTAAAGAACTTGGTGAATTGCCTGGAGTGCAGTTTCCCAATTTGCCAACTTTGAATAGCTATTTAAAGCATTGGGGAACTGATCCAGTCACTCAAAACAGAACTCTTTACACTTGGATAAATGAAGGAGGAACAGTGGGTGGCAAGAGGACATATAGAGAACAACACTTAAATGCTTCTTGTATTGCACATAAGCTCTTAACAAGTGAAAAGCCAGTGATCAAGCCTGGTGACAGAGTTCTCCTAGTCTATGTTCCTGGCCTAGATTTCATTGATGCCTTCTTTGGATGTCTAAGAGCAAAAGTTTTACCAGTCCCAGTTCTTCCCCCGGACCCCATGCAAAGAGGTGGACAAGCACTTCTAAAGATTGAGAACATTGCCAAGTCATGTGGCATAGTGGCGATTTTATCAACAGTAGCTTATCATTCAGCAGTACGTGCAGGTTTGGTGAAAAGTTTTATCTCATTAACTGGAAAGATTGGGAAACCCGCAGCTCAGTGGCCTAAACTTCCTTGGCTGCACACTGACACTTGGGTCAATAATAACTCAAGAAATTTGGCTTTGGAAGATGCAGGCGATCAATGTGAGTCCAAGCCTGGTGATTTATGTTTCTTGCAGTTTACCTCAGGTTCAACTGGTGATGCTAAAGGAGTCATGATAACACATGGAGGGCTTATTCACAATGTGAAGTTGATGAAAAGCATATACAAGAGCACCTCAAGGACTATGCTAGTGAGTTGGCTTCCTCAGTATCATGACATGGGGCTGATTGGAGGACTTTTTACAGCTCTTGTTAGCGGTGGATCTGCAGTGCTTTTCTCACCGATAACATTTATTAAGAAACCACTCTTGTGGCTTGAAACCATGAGCAAGTATCAAGCAACTCACAGTGCTGGCCCCAACTTTGCTTTTGAGTTGGTTGTTCGAAGGTTAGAGTCTGAAAAAGACAAGCTTCAGAATTTAAACCTTTCATCCATGATTTTTCTCATGGTTGCTGCTGAGCCAGTGAGGCTGAAGACCCTGAAAAGGTTTCTTGATTTAACTGCTTCTTTTGGCTTATCTCAGAAGGTGATGGCTCCAGGATATGGCTTAGCAGAAAATTGTGTGTTTGTCAGTTGTGCATTTGGTGAAGGGCGTCCTATTCTTGTTGACTGGCAGGGAAGAGTTTCTTGTGGATACATTCACCCAGGTGATGCAGATATTGACATTAGAATAGTCGATCCAGAGAACGGTGAAGAGATTCGAGAAGATGGAAAGGAAGGAGAAATCTGGATAAGTAGTCCAAGTGCTGGAATAGGATACTGGGGAAAGGAAGAACTGAGTCAGAAAACTTTTAGAAATGAGCTTCAGAACCATCCTGGACGAAACTACACAAGAACTGGAGACTTGGGAAGAATAATTGATGGGAAGCTATTCATCACCGGGAGAATCAAGGATCTTATCATTGTGGCTGGAAGAAACATCTACTCAGCAGATGTTGAGAAAACAGTAGAGAGTTCATCTGAATTTCTTCGTCCTGGGTGTTGTGCAGTCGTTGGTGTCCCTGAGGAGGTTCTATCAGCAAAGGGGATTACCCTGCCGGATGGATCTGACCAAGTTGGCTTGGTTGTGGTAGCTGAAGTTAGGGATGCTAAAGCGGTGAGCAAAGATGTGATCGAGCATATTCAGACTCGTGTGGCAGAAGAACATGGAGTCAGTGTTGCTTCTGTCAAGCTGATCAAGCCAAGAACCATCAGCAAAACAACATCAGGAAAAATCAAGAGATTTGAATGTCTCAAACAGTTTGCAGATGATACACTGAATTTGGTGCCTCAACCTATTCAGACAAGGAGAACACTGTTAAGATCATTTACTACAGGAACATGCACAGAAGGAAGAACACCCCGGGCCCAGCTGGTGAGAAGTAGCAATCCTCTGCCTATTCCAAGAATCAGTAACAAGGAAATTGTGGAGCACTTGAAAAGGCTTGTTTCTGAGCACTCAGGAATCCCAGTCAAAGATATCTCAGTCACAGAAAACATGTCTGCATACGGAATTGATTCAATCGGAGTGGTTAAAGCAACTCAAAAACTCTCAGATTTCCTGGGTGTGCCAGTTGCAGCTATAGATGTCTTCACTGCATCATGCATTCAAGAATTGGCTAACTTCTCCGAGAATCTTATGTTAAAGTCTCAACCTCAAATTATGAGCAATTCATCCCATGCTCTAGGTGCTGAAATTGACACCACTGATATGGTTGTGGATGTGTCCAGGTCTCGCCAATGGGGTATCCGTTTACTCCAACTCCTAGCACTAATTTATATTTCTGTCATGCTGTTTTCTCCTGCTTATCTATCCATCACTGCTTTTCAAAGTTTCATACCAAATGCCAGCGAATCGGTAAATGGAATGCCTTGGTCAAACTATTTGCTTTCCTTGACTTTGGCACCCCTTTCTTGGATCCTTTGCATGGTTTCTACTTGCATTTGCATTTCACTTTTGGGGAATTCTTTCTTGAGGCCAAACTATGCCCTGACACCCGAAATATCCATCTATTCAATGGATTTTGTCAAGTGGTGGGCGCTGTATAAAGCTCAGGAAATTTCTTCAAAAGTTTTGGCAACACACCTCAGAGGAACAGTGTTTCTGAAATACTGGTTTGAGATGCTTGGTGCAAGAATTGGATCCTTAGTTTTGCTGGACACAGTTGATATCACAGACCCTTCTCTGGTTTCAATTGGAGATGAAGTTGCCATTGCTGAGGGGGTTTTGGTTCAAAGCCATGAGGTGAAGAATGGAATTCTAAGTCTCCTCCCTATTAGGATAGGTAAAAATTCTTCAATTGGGCCTTATTCTACCATTCAGAAAGGAAGTGTGATTAAAGAAGGATCTGAAGTAGAACCCCTGCAAAAGGTTGAAGGAGGCCAACATGTACCCAAACCTGCTAAGCTTAATAACGTTAAAGAGAATGCAGTGTTGCTAGTTACAACCAGCAAAACTCAGTCTAATGCCATGTACCATTTTCTGGGGATCTATCTTACTGGCTTTCTCAGCTCCCTTGCTGCAGCCATTGCTTACATCCTGTACATATGGTTCTTCCAGAGACCTGCATCATTCCAACACTTTTCATTTGTTTGCTTATGTGGGGCATTCCATTGGATCCCATTTACCATTGTTGCATATGCCACCATGTTTTCTGATATCCCATCAAATCCTATTTTCTTTACCATTTCATTTTCCGGCGCGTACTTGCTTCATGGTCTCATACTCACCTCTCTCACCTGCGCCTTGACCCGTTTGCTCAAATTCAGTCAAAACCAAACCCATTTTAAAACCCGGCTTAGACATCAATTGACCATTTCCTGCCACCAAAGATTTGCCAAGCTTCTCTCGGGAACAGAAGCCTTCTGCATATATTTACGCCTTTTGGGTGCAAAAATTGGCAAGCACTGTTCTATCAGAGCCATCAACCCAGTATCAAACCCCGAGTTAATGTCAATAGGTGATGGAGTCCATCTTGGTGATTTTAGCAAGATAATCACCGGTTTCTACTATTCAAACGGATATGCTTGTGGAAAAATAGAGGTTCAGGAAAATTCAGTAGTGGGAAGTCAAAGCCTAATCCTCCCAGGCTCTGTTGTAGAAAAGAATGTCATTCTCGGTGCTCTTTCAGTTGCTCCAATGAATTCCATACTCCATGAGGGTAGCGTGTATATTGGATCTCAAACCCGAGTTGCAATCAGGAACTCTTCAAACTCTTTAGATGAACGGATAGAGGAAATGAACATGGAATACAAAAAAGTAGTTGCAAATATGGCTGCAAATTTAGCTGCAACAACTATCAATGTCAAAGCAAGATACTTCCACCGCATTGGTGTCAGTGGAAAGGGGCGCTTGAAAATCTATGAAAAACTTGAGGGCATTCCACTGCACAAGGTTTTTCAACCTGGTAAAAGCTACCCCGTCATGTTAAGACACAGTAATAGCTTGAGTGCTGATGATGATGCTAGGATCGATGCACGTGGTGCAGCTTTGAGGATTCTTTCCGATGCACCCGATTCTAACCGTGTCCCCCTCATTGACCTGACACTAAAAACTGGCAATGCGTTTTATGCTCGCACTATTGCTGATTTTGCAAGCTGGCTTGTGTGTGGACTTGCTGCGAGAGAAGAACTTGTCAAGCGTACCCCACATGTTCGTGACGCAGTGTGGAATTCACTAAGACATGCTCACTCATATGCTGAATTGCATTACTACTCAAACATTTGCAGGCTCATGCGCTTCACTGATGGACAAGAAATGTACGTGAAGTTTAAGCTGAGGCCTATTGACAGAAGCATTGGTGAGGACACAGGTAAGGTAAAACCAACTGGGATTCTTCCACCGGAAACAGGTGCAATTCCAAGGGATGAAACTGATACACGCCCGTTACTTTTCCTTGCTGAAGATTTTCAACGGCGCGTGAGTTCCCCCGGCGGAGTTCGCTATGTCTTCCAAGTGCAACTCCGACCAGTGCCTGAAGATGAAGCCACACGTGACATCGCACTAGACTGCACCAAACCATGGAATGAAAGTGAGTTCCCTTACCTTGATGTTGGAGAGATAAACATCACCGAGAATCTCTCAAGGGAAGAATCAGACAGGCTTGAATTTAACCCCTATCTCAAAAGCCATGAGTTGGATGTGATCCCTGCCACTTCCAACACCCAAAGTGCCTCAATCGATCATGGCCGCTCATTGATCTACGAGATTTGCCAGCACGTGCGTAATAGACAGCCACTCCCAGTCTCTTGGAGAAACCTCGTAGAACAATCTATCGTTAAGGTAGACTTGTCCTGCTGCCCTGTCGCAGCATCAGTAGCAACATCAAAGCCCAAAAGGGAGACAAAAATGGTGACAACCTTAACCTTAACAAGAACCTGGTACCAGACATTCTCGGCGGTTTTCACTCAACCGTTGCTCCAAGCAGTTTTGCCTTACACGGTGGTGGGTTTGTCTGTTTTTTCCCCTTTGAATTTTGTCATGAACATGAAGAACGCTGAGAAAGTCTCGGTGCAATGGTTGTTTCCTTTGTTTTGGATTCTCTCGGGTGTTATGGGCGCACTGGCATGTGTTGTGGCGAAATGGGTTCTGGTGGGAAGGAAGAGAGAGGGTGAAACAGTAGCCTTGTGGAGCAAAAGGGTCACCATGGATAGCACGTGGCAAGCCATTAGAACGCTGGTTGGGGAGTATTTCATGGACATAGCAAGTGGGTCATTTTTGTTCGTGTTATGGATGAGGTTGATGGGTGCAGATATAGACATAGATGGTGATGCTTACGTTGACAGCATGGGAGCTTTGTTGAACCCAGAAATGGTGAAGATTGAGAGAGGAGGGTGTGTGGGAAGAGAAGCGTTGCTATTTGGACACATATATGAAGGAGATGAAGGTGGAATGGTGAAGTTTGGTGGAATCAAAATTGGTGAAGATGGATTTGTAGGAAGTAGAGCTGTGGTAATGCCTGGTGTTCATTTGGAGAATGAAGCCAATCTCTCAGTCTTGTCTCTTGCCATGAAAGGAGAAATAGTTAGGTCAAGATAA 6987 0.4311 MDAEKSVEDRFSKLHPSMPVNTKIGIVGAGPSGLSAAYALVRLGYNNVTVLEKHHSVGGMCESVEIEGRVYDLGGQVLAASSAPVIFHLAKETGSPLEEMDSHKLAVIDSSSGKYQDIKVADDYVSVMSLTLAIQEKVKHSGRFGVHAVSEVASDLAPEYLEQHGLKSIPKSVAYGYTASGYGFVQDMPYAYLHEFTRTSMAGKIRRFKGGYTSLWQRIAESLPIKLHCNTEVLTIKRNSDCVTVNVKCSNEIETMEFDKIIISGNFPLKYGRTYRSVPSTNSECESEVMDASEVEKDLFSKVETNDYYTTVLKIKGLEHMPVGFYYFKEYMEDPSTIGNPVAMQKFYADSNIFLFWSYGNSADIKGPTVNELAIKSVKSMGGEVENFILQRRFKYFPHVSSQDMRNGFYEKLESELQGSRNTYYVGGLMAFELTERNSSYAMALICKKFSNSSDLPLFPYTKSLFPLQTEFQKKEPKELGELPGVQFPNLPTLNSYLKHWGTDPVTQNRTLYTWINEGGTVGGKRTYREQHLNASCIAHKLLTSEKPVIKPGDRVLLVYVPGLDFIDAFFGCLRAKVLPVPVLPPDPMQRGGQALLKIENIAKSCGIVAILSTVAYHSAVRAGLVKSFISLTGKIGKPAAQWPKLPWLHTDTWVNNNSRNLALEDAGDQCESKPGDLCFLQFTSGSTGDAKGVMITHGGLIHNVKLMKSIYKSTSRTMLVSWLPQYHDMGLIGGLFTALVSGGSAVLFSPITFIKKPLLWLETMSKYQATHSAGPNFAFELVVRRLESEKDKLQNLNLSSMIFLMVAAEPVRLKTLKRFLDLTASFGLSQKVMAPGYGLAENCVFVSCAFGEGRPILVDWQGRVSCGYIHPGDADIDIRIVDPENGEEIREDGKEGEIWISSPSAGIGYWGKEELSQKTFRNELQNHPGRNYTRTGDLGRIIDGKLFITGRIKDLIIVAGRNIYSADVEKTVESSSEFLRPGCCAVVGVPEEVLSAKGITLPDGSDQVGLVVVAEVRDAKAVSKDVIEHIQTRVAEEHGVSVASVKLIKPRTISKTTSGKIKRFECLKQFADDTLNLVPQPIQTRRTLLRSFTTGTCTEGRTPRAQLVRSSNPLPIPRISNKEIVEHLKRLVSEHSGIPVKDISVTENMSAYGIDSIGVVKATQKLSDFLGVPVAAIDVFTASCIQELANFSENLMLKSQPQIMSNSSHALGAEIDTTDMVVDVSRSRQWGIRLLQLLALIYISVMLFSPAYLSITAFQSFIPNASESVNGMPWSNYLLSLTLAPLSWILCMVSTCICISLLGNSFLRPNYALTPEISIYSMDFVKWWALYKAQEISSKVLATHLRGTVFLKYWFEMLGARIGSLVLLDTVDITDPSLVSIGDEVAIAEGVLVQSHEVKNGILSLLPIRIGKNSSIGPYSTIQKGSVIKEGSEVEPLQKVEGGQHVPKPAKLNNVKENAVLLVTTSKTQSNAMYHFLGIYLTGFLSSLAAAIAYILYIWFFQRPASFQHFSFVCLCGAFHWIPFTIVAYATMFSDIPSNPIFFTISFSGAYLLHGLILTSLTCALTRLLKFSQNQTHFKTRLRHQLTISCHQRFAKLLSGTEAFCIYLRLLGAKIGKHCSIRAINPVSNPELMSIGDGVHLGDFSKIITGFYYSNGYACGKIEVQENSVVGSQSLILPGSVVEKNVILGALSVAPMNSILHEGSVYIGSQTRVAIRNSSNSLDERIEEMNMEYKKVVANMAANLAATTINVKARYFHRIGVSGKGRLKIYEKLEGIPLHKVFQPGKSYPVMLRHSNSLSADDDARIDARGAALRILSDAPDSNRVPLIDLTLKTGNAFYARTIADFASWLVCGLAAREELVKRTPHVRDAVWNSLRHAHSYAELHYYSNICRLMRFTDGQEMYVKFKLRPIDRSIGEDTGKVKPTGILPPETGAIPRDETDTRPLLFLAEDFQRRVSSPGGVRYVFQVQLRPVPEDEATRDIALDCTKPWNESEFPYLDVGEINITENLSREESDRLEFNPYLKSHELDVIPATSNTQSASIDHGRSLIYEICQHVRNRQPLPVSWRNLVEQSIVKVDLSCCPVAASVATSKPKRETKMVTTLTLTRTWYQTFSAVFTQPLLQAVLPYTVVGLSVFSPLNFVMNMKNAEKVSVQWLFPLFWILSGVMGALACVVAKWVLVGRKREGETVALWSKRVTMDSTWQAIRTLVGEYFMDIASGSFLFVLWMRLMGADIDIDGDAYVDSMGALLNPEMVKIERGGCVGREALLFGHIYEGDEGGMVKFGGIKIGEDGFVGSRAVVMPGVHLENEANLSVLSLAMKGEIVRSR 2328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00435 2328 ProSitePatterns Putative AMP-binding domain signature. 681 692 IPR020845 -
Vimu4g00435 2328 SUPERFAMILY Acetyl-CoA synthetase-like 504 1081 - -
Vimu4g00435 2328 Gene3D - 94 202 - -
Vimu4g00435 2328 ProSitePatterns Phosphopantetheine attachment site. 1152 1167 IPR006162 -
Vimu4g00435 2328 SUPERFAMILY FAD/NAD(P)-binding domain 18 271 IPR036188 -
Vimu4g00435 2328 Gene3D - 303 396 - -
Vimu4g00435 2328 Gene3D Hexapeptide repeat proteins 1360 1473 - -
Vimu4g00435 2328 SUPERFAMILY Trimeric LpxA-like enzymes 2174 2320 IPR011004 -
Vimu4g00435 2328 SUPERFAMILY Heme-dependent catalase-like 1747 2059 IPR020835 GO:0020037
Vimu4g00435 2328 Gene3D - 482 953 IPR042099 -
Vimu4g00435 2328 ProSiteProfiles catalase family profile. 1686 2328 IPR018028 GO:0004096|GO:0006979|GO:0020037
Vimu4g00435 2328 Gene3D Catalase core domain 1714 2067 - -
Vimu4g00435 2328 Gene3D Hexapeptide repeat proteins 1575 1713 - -
Vimu4g00435 2328 Pfam Flavin containing amine oxidoreductase 32 265 IPR002937 GO:0016491
Vimu4g00435 2328 Gene3D - 954 1082 IPR045851 -
Vimu4g00435 2328 Gene3D - 1116 1196 IPR036736 -
Vimu4g00435 2328 CDD FAAL 509 1073 IPR040097 GO:0008610
Vimu4g00435 2328 PANTHER DISCO-INTERACTING PROTEIN 2 DIP2 -RELATED 132 2078 - -
Vimu4g00435 2328 PRINTS Adrenodoxin reductase family signature 23 45 - -
Vimu4g00435 2328 PRINTS Adrenodoxin reductase family signature 47 60 - -
Vimu4g00435 2328 Gene3D - 23 446 IPR036188 -
Vimu4g00435 2328 SUPERFAMILY Trimeric LpxA-like enzymes 1347 1449 IPR011004 -
Vimu4g00435 2328 SUPERFAMILY Trimeric LpxA-like enzymes 1603 1715 IPR011004 -
Vimu4g00435 2328 ProSiteProfiles Carrier protein (CP) domain profile. 1123 1197 IPR009081 -
Vimu4g00435 2328 Pfam Phosphopantetheine attachment site 1129 1192 IPR009081 -
Vimu4g00435 2328 Pfam AMP-binding enzyme 522 959 IPR000873 -
Vimu4g00435 2328 SUPERFAMILY ACP-like 1120 1197 IPR036736 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00435 Vimu-Chr4 3168346 3176104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00435 671 1070 Monolignol Biosynthesis Gene Families AT4G05160 24.752 1.23e-18 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00435 - - gsj:114374875 3645.13