Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00403 ATGGATCACGAATCTGGCCAAGGATTTGATTCGGATGATAGTGACCTTGATATGCAAGCAGAAATTAGTGAGAAACACCAGAAATTAGATGAATTTTCAAAAAACCTAGAATTATGTGGAAGTGAAGATGAGAAGTTTGTCGAACTACCTGCAACAGAAATTCCAACAGATATAGAAGCTGTTGAACCATTCATAGGCATGGAGTTCAATTCAAGAGAGGAAGCGAGAGAATTCTACATTGCCTATGGTAGGCGAATAGGGTTTACAGTACGAATACACCACAACCGTCGTTCACGAGTAAATAACCAGGTTATTGGTCAAGATTTTGTCTGCTCAAAAGAAGGCTTTCGTGCAAAAAAGTATGTACACAGAAAAGATAGGGTGCTGCCTCCGCCACCAGCCACTCGTGAAGGTTGTCAGGCCATGATAAGGCTGGCTTTACGGGATGGAGGGAAGTGGGTTGTCACCAAATTTGTAAAGGAGCATAATCATAAGCTAATGAGTCCCAGTAAAGTTCCATGGCGAGGATCTGGGAAGCACTTGGTTAGCGAGGATGAGAAGGATAGGAGAATCCGTGAGCTATCACTTGAGTTGTATAATGAAAGGCAAAAGTGCAAACGACGTTGTGCTGCATATGAAGAGCAGTTAAATATGATTCTGAACGATTTAGAGAAGCACACCGAACATATTTCTGAAAAAGTTGCTGCTGTAGTACGAAGTATTAGAGAGATTGAGGAGGAAAAATCAGATTCAGATGGTGGGTAA 765 0.417 MDHESGQGFDSDDSDLDMQAEISEKHQKLDEFSKNLELCGSEDEKFVELPATEIPTDIEAVEPFIGMEFNSREEAREFYIAYGRRIGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVHRKDRVLPPPPATREGCQAMIRLALRDGGKWVVTKFVKEHNHKLMSPSKVPWRGSGKHLVSEDEKDRRIRELSLELYNERQKCKRRCAAYEEQLNMILNDLEKHTEHISEKVAAVVRSIREIEEEKSDSDGG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00403 254 Pfam FAR1 DNA-binding domain 77 167 IPR004330 -
Vimu4g00403 254 Coils Coil 202 229 - -
Vimu4g00403 254 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 13 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00403 Vimu-Chr4 2876593 2878294 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu4g00403 FAR1 6.9e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00403 - - gmx:100813124 487.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00403 4 2876593 2878294 Vimu4g00403 4 2876593 2878294 ECH