LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu4g00401	ATGTCTTCCATTGCCGTCTCTTACGGCGACAAAGGGTCCGCGTTTTGTGGCTTGAAACCGGATGGATCTCACACTGTAAACTGTTACGGGATGAACTCAGCCATAATTTATGGAACACCAACACATTTTCCGTTCTTTGGTCTAACAGCCGGTGATGGCTTTGTGTGCGGGCTTTTGATGAGTTCTAGTCAACCATATTGCTGGGGTAGCAGTGGCCATGTTGAAATGGGTGTGCCACAACCTATGGTTAAGGGAGCTCAGTACCTAGAGATCAGTGCCGGGGATTTTCACGTTTGTGGATTGAGGAAACCGTTAACTGGAAGACACAGGAACACTTCTTTGGTTGATTGTTGGGGCTACAACATGACAAATAACTATGTGTTTGATGGGCAGGTTCAAGCAATCTCAGCAGGCTCTCAGTTCAATTGTGGCTTGTTTTCTCAGAACAGAAGTGTGTTCTGCTGGGGGGACGAGACAAGTAGCCAAGTTATTAATATGGTCCCTAAGGGCATGAAGTTTCAGAAGATCTCTGCTGGAGGGTACCATGTGTGTGGAATCTTGGAAGGGGTGAATTCTAGAGCTGTTTGTTGGGGGAGGAGCTTGCTGGATTTGGGTGAAGAACTTTCAATTTCATTGACAGGTTCAGGACAAGGACAAGGTAAAGTTGAATTGGCTCCCAATGATCCCATGCTTTCAGTGGTGGGAGGGAAGTTCCATGCATGTGGCATTAAGAGCTATGATCATGGAGTGGTTTGTTGGGGCTATAGTTTCAAAGCAGGCACCAGAGTTCCTAGTGGGATTAAGGCCTTTGAGATTGGTGCTGGGAATTACTTTACCTGTGGAGTGCTTGTTGAGAAATCTCATATGCCTGTGTGTTGGGGTGTTGGCTTCCCCACTTCTCTCCCTTTGCCTGTCTCACCAAGAATGTGTAGGTCTACTCCATGTCCTCCAGCTTACTTTGAAACCTCACAAAATGGTATATGCAAGTCACCAGATTCCCATGTTTGCATGCCATGCAGTGCTTCTTGTCCTCCTGAGATGTACAAGAGAAATGGATGCAATTTGAAATCTGACATACTATGTGAATATAACTGTTCTCTCTGTTCCTCACCTGAATGCCTCTCCAATTGCTCCTCTTCCTATTCCAATGCTGCCTCTGGCAAGAGAAGTGAAAAATTTTGGTCACTTCAACTGCCCGTGATTATTGCAGAGATAGCTTTTGCTGTTTTCTTTGTTTGTATTGTGTCCATAACTGCGGTGTTGTATGTTCGCTACAAGCTAAGAGATTGTCAGTGTTCTTCTTCAGCAAGAGGGTCAAAGGGGAAGAAACTAAGAGGGAGTTCGTCACACCAGAAGGAGAAATCCAAGGTCCGACCAGACTTGGAGGAGTTCAAGATTAGGAGAGCACAGATGTTCCCGTACGAGGAACTTGAAAGAGCAACCGGTGGATTCAAAGAGGAGTCCATAGTGGGGAAGGGAAGTTTCTCTTGTGTGTTCAAAGGGGTTCTCAAAGATGGCACTGTTGTTGCTGTTAAAAGGGCCATAGTGTATCCCAACGTGCAGAAGAATTCCAAGGAGTTTCACACCGAGCTTGACTTGCTTTCTAGGCTGAACCACGCACACTTGCTCAATCTACTAGGCTACTGTGAGGAGGGTGGAGAGAGACTCCTTGTTTATGAGTACATGGCTCACGGCTCATTGCATCAACACCTTCATGGCAGCAAAGTGATGAAAGAGCAAATGGATTGGGTGAGAAGGGTGACGATTGCAGTGCAAGCAGCTCGTGGAATCGAATATCTGCACGGCTATGCTTGTCCACCTGTGATTCACAGAGACATAAAGTCTTCAAACATTCTCATCGATGAAGAACACAATGCGAGAGTGGCTGATTTTGGTTTGTCACTGCTTGGTCCTGCAGATAGCAGCTCTCCACTGGCTGAACTACCAGCTGGGACTCTTGGCTATCTTGATCCTGAATACTACAGGCTCCATTACCTCACCACAAAGTCTGATGTATACAGCTTTGGCGTTCTACTTTTGGAGATACTGAGCGGGAGAAAAGCTATTGACATGCAGTATGAAGAAGGGAACATTGTTCAATGGGCAGTGCCTCTGATAAAGTCAGGAGACATAGGTTCAATTCTGGATCCAGTTTTGAAAGCTCCTTCTGATGTTGATGCATTGAGAAGAATAGCTAACGTGGCTTGTAAAAGTGTGAGGATGAAAGGGAAGGATAGGCCTTCAATGGACAAAGTGACAACAGTTTTGGAGAGAGCTCTTGCACAGTTGATGGGGAGTCCTTGCATTGAGCAGCCAATTTTGCCAACTGAGGTGGTTTTGGGAAGCAACAGACTGCACAAAAAATCATCTCAAAGATCTTCAAACAGGTCAGCCTCAGAAAGCACTGATGTGGAAGATCAGAGGTTTGAATTCAGAGCACCCTCATGGATCACTTTCCCCAGTGTCACTTCTTCTCAGAGAAGATCAGGCTCAGAGGCTGATGTTGAGGGAAAAAATGTAGAAGGAAGGAATTTGGGCAATGTCGGAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGATGGTCTCAAAAGTCTTGAGGAAGAGATTGGTCTTGCTTCTCCACGAGAGAAACTCTTCTTGCAACACAACTTCTGA	2655	0.4606	MSSIAVSYGDKGSAFCGLKPDGSHTVNCYGMNSAIIYGTPTHFPFFGLTAGDGFVCGLLMSSSQPYCWGSSGHVEMGVPQPMVKGAQYLEISAGDFHVCGLRKPLTGRHRNTSLVDCWGYNMTNNYVFDGQVQAISAGSQFNCGLFSQNRSVFCWGDETSSQVINMVPKGMKFQKISAGGYHVCGILEGVNSRAVCWGRSLLDLGEELSISLTGSGQGQGKVELAPNDPMLSVVGGKFHACGIKSYDHGVVCWGYSFKAGTRVPSGIKAFEIGAGNYFTCGVLVEKSHMPVCWGVGFPTSLPLPVSPRMCRSTPCPPAYFETSQNGICKSPDSHVCMPCSASCPPEMYKRNGCNLKSDILCEYNCSLCSSPECLSNCSSSYSNAASGKRSEKFWSLQLPVIIAEIAFAVFFVCIVSITAVLYVRYKLRDCQCSSSARGSKGKKLRGSSSHQKEKSKVRPDLEEFKIRRAQMFPYEELERATGGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIVYPNVQKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQHLHGSKVMKEQMDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVQWAVPLIKSGDIGSILDPVLKAPSDVDALRRIANVACKSVRMKGKDRPSMDKVTTVLERALAQLMGSPCIEQPILPTEVVLGSNRLHKKSSQRSSNRSASESTDVEDQRFEFRAPSWITFPSVTSSQRRSGSEADVEGKNVEGRNLGNVGGGGGGGGGGGDGLKSLEEEIGLASPREKLFLQHNF	884

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu4g00401	884	SUPERFAMILY	Protein kinase-like (PK-like)	464	756	IPR011009	-
	Vimu4g00401	884	ProSitePatterns	Protein kinases ATP-binding region signature.	490	512	IPR017441	GO:0005524
	Vimu4g00401	884	FunFam	serine/threonine-protein kinase-like protein CCR1	454	561	-	-
	Vimu4g00401	884	SUPERFAMILY	RCC1/BLIP-II	11	200	IPR009091	-
	Vimu4g00401	884	FunFam	Receptor protein kinase CRINKLY4	562	763	-	-
	Vimu4g00401	884	FunFam	Serine/threonine-protein kinase-like protein CR4	1	164	-	-
	Vimu4g00401	884	Gene3D	Transferase(Phosphotransferase) domain 1	562	766	-	-
	Vimu4g00401	884	MobiDBLite	consensus disorder prediction	433	458	-	-
	Vimu4g00401	884	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	608	620	IPR008271	GO:0004672\|GO:0006468
	Vimu4g00401	884	ProSiteProfiles	Protein kinase domain profile.	484	760	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu4g00401	884	Gene3D	-	45	313	IPR009091	-
	Vimu4g00401	884	MobiDBLite	consensus disorder prediction	785	806	-	-
	Vimu4g00401	884	Pfam	Protein kinase domain	484	699	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu4g00401	884	SMART	serkin_6	484	761	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu4g00401	884	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4	1	884	-	-
	Vimu4g00401	884	SUPERFAMILY	RCC1/BLIP-II	218	309	IPR009091	-
	Vimu4g00401	884	Gene3D	Phosphorylase Kinase; domain 1	454	561	-	-
	Vimu4g00401	884	ProSiteProfiles	TNFR/NGFR family cysteine-rich region domain profile.	314	361	IPR001368	GO:0005515
	Vimu4g00401	884	MobiDBLite	consensus disorder prediction	822	869	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu4g00401	Vimu-Chr4	2860375	2863029	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu4g00401	1	884	Receptor kinase-like Gene Family	AT3G59420	66.853	0.0	1197

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Vimu4g00401		Pkinase	1.1e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu4g00401	-		-	gmx:100807392	1585.85