Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00400 ATGAATCTGCTCTCTCTGCACGGAACACAAAAACATAAAAGTAAATTTTCACAATCACGGTCGCTTCCTACGACAATCGAATTTGCGTCAGCCTCAATTCTCATGGAGTTTGGGATTGATGGCTCCATTAATGGTGAGACAGTAGGAAATGTTACTCTAGAGCAGATTAACAGCTGCAGCACACCTGATGAAAACAAAGTAGGTTGCAGCTCTTTCAATCCTGCTTATAAACATGATCATGATGATAATATAACTCAAGATTCTTCTGGAGGGGACACAATCCCATCAGGAATTCCTGCAGTATCAGTTGTTTCAGCTGATGAGCCCTATGTGGGACAGGAGTTTGATTCTGAAGCTGCAGCACATGCATTCTATAATGCATATGCTACCCGGGTTGGATTCATCATACGTGTGAGTAAGCTCTCACGATCAAGGCGTGACGGATCTGCTATTGGACGGGCTCTCGTTTGCAACAGAGAAGGTTACAGAATGCCTGACAAGCGTGAAAAGATTGTAAGGCAAAGGGCAGAGACTAGGGTTGGTTGCAGGGCAATGATTTTGGTGAGGAAAGTAAGTTCCGGTAAATGGGTTGTTACTAAGTTTATACAGGAGCACACCCATCCTTTAACACCTGGAAAAGGTAGAAGGGATTGCATTTACGAGCAATACCCGAACGAACATGATAAAATTCGAGAACTGTCTCAGCAGTTGGCCATTGAGAAAAAACGGTCTGCAACCTATAAAAGGCATCTTGAGTTGATATTTGAGCACATTGAAGAGCATAATGAAAGCCTTTCAAAGAAAATACAACACATAGTGGACAGTGTGAAGGAGATGGAAACCAAAGAACAACAGAGTCATAGATAG 867 0.4256 MNLLSLHGTQKHKSKFSQSRSLPTTIEFASASILMEFGIDGSINGETVGNVTLEQINSCSTPDENKVGCSSFNPAYKHDHDDNITQDSSGGDTIPSGIPAVSVVSADEPYVGQEFDSEAAAHAFYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNREGYRMPDKREKIVRQRAETRVGCRAMILVRKVSSGKWVVTKFIQEHTHPLTPGKGRRDCIYEQYPNEHDKIRELSQQLAIEKKRSATYKRHLELIFEHIEEHNESLSKKIQHIVDSVKEMETKEQQSHR 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00400 288 Pfam FAR1 DNA-binding domain 124 210 IPR004330 -
Vimu4g00400 288 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 58 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00400 Vimu-Chr4 2856020 2858507 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu4g00400 FAR1 8.4e-30 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00400 - - gmx:100806900 451.055
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00400 4 2856020 2858507 Vimu4g00400 4 2856020 2858507 ECH
Vimu4g00400 4 2856020 2858507 Vimu5g02244 5 33646198 33647133 PCT