Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00396 ATGCGACACTCCAAGGTTCGTCCAGATGCAGCTTCTGATGAATCACCTGATGTACAACACTATCCACAGCTTGACCATGGAGGGTGGTCAAGGCGTGGTCGTGAGTTTTGTGAGGCGAGAAGAGCGTTTTTGAACAGTTACCATTTGAGTTTGGAAAGAAACAACAATGGAAGCTTCAAGGAAAAGTTGAAGAAATCGGTTAAGGAGGTTAACGAAGCCGCCATGGGAGTTGTTTTGAGCATGCATCGTAGGGTGCTGTCTAAGAGACGACTTAAAATAAGAGTTTTTAGGATCAGAATGATGTCACACTCGTTGGCTCTTGTTAGTATTAGATGTTTCATTCCATGGATCAACAAAAATGACATTATGGCTCCGGCAACAGTGATTTGTTGCGCGGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCGAACAAACTTGCAAGCAAGCACCAAAGGCTTCTCCTTCAATGTCTATCAAACAAGCTTCCCAGATGTGACATTTGCCAATTAACACCTTTGCTGAAATGGGAATACCATTGTCTGATGGATCTGATGGATGTTGGAATTGTAAAAGCTTCAAAAATCTTTGTTCCTCATTTTGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGACTGTGATGAACCAATTCATTCTGCTGGAAGCCTTTCTGCAAACCACCAGCGCTTCCTAGCTACTGGTATCAGAGTGGCCTCAAGTTCTAGTTGCACCAAAGACAATGAAAACAGTCACTTGGAGCCTCCCAATAGGAATGCACAACAAGTTTCCACCAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCTGTTGATGACTTTTTGGAGTTAACAGGCTTTGAATCACCTGAGAAAAAGGAATCTCTACAATTTGGAGAGCTGGAATGGCTTACAGATGTGGGTATTTTTGGTGAACAATTTACTCAGGAAGCCTTGGCTGCAGCTGAAGTTCCTCAGCTTCCAGTAACTAATAATAGCAGCAGTGTTGCCTCATTCAGAACCTCCAAGTCCTACATGTCACACAAAAAACCTAGGATTGAAGTCCTAAATGATGATGATGATGATGAGTACTTTACTGTGCCTGATCTTGGCTAG 1155 0.432 MRHSKVRPDAASDESPDVQHYPQLDHGGWSRRGREFCEARRAFLNSYHLSLERNNNGSFKEKLKKSVKEVNEAAMGVVLSMHRRVLSKRRLKIRVFRIRMMSHSLALVSIRCFIPWINKNDIMAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQLTPLLKWEYHCLMDLMDVGIVKASKIFVPHFDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSSCTKDNENSHLEPPNRNAQQVSTKVPSQQVPSFTSSWAVDDFLELTGFESPEKKESLQFGELEWLTDVGIFGEQFTQEALAAAEVPQLPVTNNSSSVASFRTSKSYMSHKKPRIEVLNDDDDDEYFTVPDLG 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00396 384 SMART bboxneu5 124 160 IPR000315 GO:0008270
Vimu4g00396 384 SMART bboxneu5 204 243 IPR000315 GO:0008270
Vimu4g00396 384 MobiDBLite consensus disorder prediction 1 26 - -
Vimu4g00396 384 CDD Bbox1_BBX-like 206 242 - -
Vimu4g00396 384 PANTHER B-BOX ZINC FINGER PROTEIN 22 124 383 - -
Vimu4g00396 384 CDD Bbox1_BBX-like 123 160 - -
Vimu4g00396 384 MobiDBLite consensus disorder prediction 252 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00396 Vimu-Chr4 2833399 2837475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00396 124 305 Orphan Transcription Factor Family AT1G06040 50.262 1.04e-51 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00396 - - vun:114183169 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00396 4 2833399 2837475 Vimu4g00396 4 2833399 2837475 ECH
Vimu4g00396 4 2833399 2837475 Vimu5g02247 5 33659843 33662153 PCT