Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00390 ATGGCGCCTCCTACAAAATCCGTGGAAAGCGAGGAGTGGGGAACTCCAACAAACAACCTCTGGGTTGGAAATCTGCCGCCGGATGTCGCCGATTCCGATCTCATGGAACTATTCGCTCCGTACGGTTCTCTCGACGCACTAATTTCCTATTCCCCACGCACCTTCGCTTTCGTGTTGTTCGGACGCGTCGAAGAAGCCAAGGCGGCGAAAACAAATTTACAAGGCGCGTCGCTGCGCGGCTTTCAAATCAGAATCGAATTTGCAATACCGGCAAGACCGTCTAAACAGCTATGGGTGGGTGGTGTTAGCCACAGCGTAGCGATGGAGGATTTGGAAGCGGAGTTTCGTAAATTCGGTAAGATTGAGGAATTCAAGTTCTTCAGAGACCGTCGTACTGCGTGTGTTGAGTTTCTCAATTTGGATGATGCTACGCGGGCCATGAAAGTCATGAACGGGAAGCGATTAGGTGGTAGCCATATTTGTGTTGACTTCCTTAGGTCACAATCTATGAATAGGGATTTTATGGTTGACCAAGGGCAGTTTCAGGCTAGACCACAGCATTTACAACCTTCAATGGGGAGGAATAGTCCACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCGTTTCAAATTGATGAACAAATGCTCCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCTCGACACTATTCGTTTGTTGAGTTTAGAAGCATTGATGAAGCTCGCCGTGCCAAAGAGGGCCTTCAGGGACGGCTTTTTAATGATCCTAGAATAACGATTATGTATTCAAGCAGTGATACAACACCTGGCAAAGATTACCCAGGATTTTACCCTGGAAGTAAAGGGCCTTTACCCGAAGGATTAATGAATGAGCTTCCATTTCGACCACCACAATCGGATGTATTTGGTCAAAATCGTCCTATTGTTCCAAATAATTTTCCAGGGCAATTGCCACCTGGTGGTATAAGTGGACCTACTGTCTCGATGCGACCTTTTGTTCCCCAAGGTCTTGATCCTCTTAACAATGGTCCTGATTTTAATGAGATGAGCACACTTCACAAATTTCAAGATGGTAGCTCGAAAATGGGTCCAAGCTGGAAAAGGCCATCTCCTCCTGCCCCTGGTATGCTTTCTTCTCCTATGCCTGGTATTAGGCCCAGCTCCGGTCCATGGGATGTACTTGACACAAACCAATTTTCAAGAGATTCTAAACGTTCAAGGATAGATGATGCTTTGCTAATTGGTGATGCTTCATTTCCTTTAAGAAATAATGATGACCGCGGATTAAGATTAGAACAACCATTTGCAATCGATCCAATTATTGATGGAGGTGGTTCTGGTCCAAAGGGTCACCTTGGTCCAGTCGGCACTAGGATCACTTCTGGAGTTCCTGGTTCTGTCCAACCTGATATTGATCATATATGGCGTGGAGTTATTGCGAAAGGTGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGCACTGAGATTCCTGATGTTGTAGATTGTGCTGCTAGAACTGGATTGGATATGTTAACGAAACACTATACTGATGCAATTGGCTTTGAAATTGTTTTCTTTCTCCCTGATAGCGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGTTACCTTAAAGCAAAAAACCGTGCTGGTGTTGCCAAGTTTATTGATAATACCACCTTATTTTTGGTACCTCCTTCTGATTTCTTGACCAAGGTTTTGAAAGTCACGGGACCTGAACGATTATACGGTGTGGTTCTTAAGTTTCCACCAGTTCCAAGTAGCACATCTATGCAACAAGCAATGCATTTTCCTTCGCCCTCTACTCAGTATGTGCAACAGATTCCCCCTTCACAACCAGAGTATGCTTCAATCTCTGTAAAGGAGCAACCAATTTTACCAATGGAATATAATAGATTGTTGCACGATGATTCTAAGCATATGCCAAAACCACTTCATCTTGCGACCAGTGTCACTCCTCCAGTTCATTCTGTTCCAACTGATTATTCTTCTACTTATACAGCTTCTGCATCCCAAGCGGGAGTTACATTGACCCCTGAACTTATTGCAACTTTAAGTTCGTTTCTCCCTTCAACTATGCAATCATCAACAGCTGGTGGCACAACGACAGTGGTTGGTCCCTCTACTATGAAGCCACCTTTTCCATCTGTTGCATCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGATCAGCAAACTACGGATCCACCTAGTTATCGTCCTCAACAGTTTGGGAGTATTAATAATGCTCAATATCATCCTTATCCACCTGCATCTTCTACTGGGCACCCTGCTCAAGTTGTCTCTGGCAGTGCTCATTTCCATGATGCGGCTTCAAGTCTTCAGCAGCTAGGAGCTTTTTCGTCATCTACATCCTTGACTAATTTCATTATACCTCCTCAAAATGGACAGGAAGCTGTTCCCGCTCAACTCAGTCAACAGTATCAGGTGGAAGTGCCCCACAGCAATGAGAAAGGATATGGAGTAGTTCAGGGAACAGATCCCTCTGTTCTATATAGTTCTAAGGCATTCCAACAACCTAATAATCTTATTCCTTCATCCAACCAAGTTTCCAATGCTGCTTCACAGCAACACATGAATTCAGAGCCCCCAAATCAGCAACTTCAACCTGCTGGCCAGGGAATCTCTGAATTGGAGGCTGATAAGAACCAGAGGTACCACTCAACACTACAGTTTGCTGCAAACCTTCTCTTCCAAATACAGCAACAGCAAACCCAAGGAGAGCATGGACCTGGAAATCAACAATAA 2835 0.442 MAPPTKSVESEEWGTPTNNLWVGNLPPDVADSDLMELFAPYGSLDALISYSPRTFAFVLFGRVEEAKAAKTNLQGASLRGFQIRIEFAIPARPSKQLWVGGVSHSVAMEDLEAEFRKFGKIEEFKFFRDRRTACVEFLNLDDATRAMKVMNGKRLGGSHICVDFLRSQSMNRDFMVDQGQFQARPQHLQPSMGRNSPPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSIDEARRAKEGLQGRLFNDPRITIMYSSSDTTPGKDYPGFYPGSKGPLPEGLMNELPFRPPQSDVFGQNRPIVPNNFPGQLPPGGISGPTVSMRPFVPQGLDPLNNGPDFNEMSTLHKFQDGSSKMGPSWKRPSPPAPGMLSSPMPGIRPSSGPWDVLDTNQFSRDSKRSRIDDALLIGDASFPLRNNDDRGLRLEQPFAIDPIIDGGGSGPKGHLGPVGTRITSGVPGSVQPDIDHIWRGVIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLTKHYTDAIGFEIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFIDNTTLFLVPPSDFLTKVLKVTGPERLYGVVLKFPPVPSSTSMQQAMHFPSPSTQYVQQIPPSQPEYASISVKEQPILPMEYNRLLHDDSKHMPKPLHLATSVTPPVHSVPTDYSSTYTASASQAGVTLTPELIATLSSFLPSTMQSSTAGGTTTVVGPSTMKPPFPSVASNDGNQSHLWKQDQQTTDPPSYRPQQFGSINNAQYHPYPPASSTGHPAQVVSGSAHFHDAASSLQQLGAFSSSTSLTNFIIPPQNGQEAVPAQLSQQYQVEVPHSNEKGYGVVQGTDPSVLYSSKAFQQPNNLIPSSNQVSNAASQQHMNSEPPNQQLQPAGQGISELEADKNQRYHSTLQFAANLLFQIQQQQTQGEHGPGNQQ 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00390 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Vimu4g00390 944 CDD RRM_SF 97 163 - -
Vimu4g00390 944 SMART rrm1_1 19 86 IPR000504 GO:0003723
Vimu4g00390 944 SMART rrm1_1 96 163 IPR000504 GO:0003723
Vimu4g00390 944 SMART rrm1_1 201 269 IPR000504 GO:0003723
Vimu4g00390 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Vimu4g00390 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Vimu4g00390 944 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Vimu4g00390 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Vimu4g00390 944 FunFam Flowering time control protein FPA 10 92 - -
Vimu4g00390 944 FunFam flowering time control protein FPA 193 286 - -
Vimu4g00390 944 SUPERFAMILY RNA-binding domain, RBD 185 275 IPR035979 GO:0003676
Vimu4g00390 944 CDD RRM_SF 20 86 - -
Vimu4g00390 944 MobiDBLite consensus disorder prediction 870 900 - -
Vimu4g00390 944 MobiDBLite consensus disorder prediction 714 789 - -
Vimu4g00390 944 SUPERFAMILY RNA-binding domain, RBD 16 171 IPR035979 GO:0003676
Vimu4g00390 944 Gene3D - 2 93 IPR012677 -
Vimu4g00390 944 Gene3D - 94 192 IPR012677 -
Vimu4g00390 944 Gene3D - 193 279 IPR012677 -
Vimu4g00390 944 PANTHER RNA RECOGNITION MOTIF-CONTAINING 11 100 - -
Vimu4g00390 944 MobiDBLite consensus disorder prediction 365 405 - -
Vimu4g00390 944 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Vimu4g00390 944 Pfam SPOC domain 477 594 IPR012921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00390 Vimu-Chr4 2786159 2790648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00390 97 268 Eukaryotic Initiation Factors Gene Family AT4G34110 28.415 1.29e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00390 - - gmx:100806555 1471.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00390 4 2786159 2790648 Vimu4g00390 4 2786159 2790648 ECH
Vimu4g00390 4 2786159 2790648 Vimu5g02252 5 33688784 33695468 PCT