Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00386 ATGCACTTAAGTCCTTACACTACCACTCCAAAGAAGCCATCAACACACTCCAACAGCCACCACAACCACCACCACCACCACCACCATAGCAACAACATTGTTGATGAAGCTGCAGCGTTAGATAACAACAACATGCATCGGAGCAACCAGAGCCACACATCCACAAGTCGTTCTTCGGACTCCAGTGAGCCGAATGAAGATGGCAAATGGGCACCTAAGCTTCTGAGAGAGTGTGCAAAAGCAATATCAGAGAGAGACTCGACGAAAACGCACCATCTTTTGTGGATGCTTAATGAGCTTGCTTCGCCCTACGGTGACTGCGATCAAAAGCTCGCGTCTTACTTCTTGCAAGCCTTGTTCTGCAGAGCCACCGAGTCCGGTGAGAGATGCTACAAGACGCTCTCCTCCGTGGCGGAGAAGAACCACTCCTTCGATTCCGCCAGGAGGTTGATTCTCAAGTTTCAAGAGGTGAGCCCTTGGACCACGTTCGGACACGTGGCCTCCAACGGGGCCATCTTGGAGGCCTTGGAGGGAGAGCCCAAACTCCACATCATCGATCTCAGCAACACGCTTTGCACGCAGTGGCCTACTTTGTTGGAGGCTTTGGCCACGAGAAACGACGAAACGCCGCACCTGAAACTCACCGTGGTGGCGCTTGCGGGGTCGGTGATGAAGGAGGTTGGTCAACGGATGGAGAAGTTCGCGAGGCTCATGGGCGTGCCCTTTGAATTCAACGTGATCAGTGGCCTGAGGGATCTCACAAAAGAAGGCCTGGGGGTTCAGGAGGACGAAGCCATCGCCGTGAACTGCGTTGGGGCGTTGAGAAGAGTGGAGGTCGAAGAGAGGGAAAACTTGATTCGCGTGTTCAAGTCTCTGGGTCCTAAAGTGGTGACCGTTGTGGAGGAAGAAGCCGATTTTTGCAGCTCCAGGGAGGATTTCGTGAAGTGCTTCGAGGAGTGTCTGAAGTTCTACTCTCTCTACTTCGAGATGCTGGAGGAGAGTTTTCCCCCGACCAGCAACGAGAGGTTGATGTTGGAGAGGGAGTGTTCAAGAAGCATAGTTAGGGTTTTGGCATGCTGTGGTGGTGGTGATGGTGGTGGTGATGACATAGAAGACGATGGAGAAGATCAGTTTGATTGTTGTGAGAGGAGAGAGAGAGGAACACAGTGGTGTGAGAGGCTGAGGAATGCTTTTTCGCCGGTTGGTTTCAGCGACGATGTGGTTGATGATGTTAAAGCATTGCTTAAGAGATACCAACCAGGTTGGTCACTTGTGGTGTCTCAGGGTGATGATCATCTCTCAGGGATTTACTTGACATGGAAGGAGGAACCAGTGGTTTGGGCTTCAGCATGGAAACCCTAG 1362 0.5206 MHLSPYTTTPKKPSTHSNSHHNHHHHHHHSNNIVDEAAALDNNNMHRSNQSHTSTSRSSDSSEPNEDGKWAPKLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSARRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVALAGSVMKEVGQRMEKFARLMGVPFEFNVISGLRDLTKEGLGVQEDEAIAVNCVGALRRVEVEERENLIRVFKSLGPKVVTVVEEEADFCSSREDFVKCFEECLKFYSLYFEMLEESFPPTSNERLMLERECSRSIVRVLACCGGGDGGGDDIEDDGEDQFDCCERRERGTQWCERLRNAFSPVGFSDDVVDDVKALLKRYQPGWSLVVSQGDDHLSGIYLTWKEEPVVWASAWKP 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00386 453 MobiDBLite consensus disorder prediction 1 15 - -
Vimu4g00386 453 MobiDBLite consensus disorder prediction 45 61 - -
Vimu4g00386 453 ProSiteProfiles GRAS family profile. 62 452 IPR005202 -
Vimu4g00386 453 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 59 442 IPR005202 -
Vimu4g00386 453 MobiDBLite consensus disorder prediction 45 70 - -
Vimu4g00386 453 MobiDBLite consensus disorder prediction 1 30 - -
Vimu4g00386 453 Pfam GRAS domain family 73 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00386 Vimu-Chr4 2755001 2756362 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00386 46 453 GRAS Transcription Factor Family AT4G37650 51.157 1.31e-144 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu4g00386 GRAS 2.7e-93 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00386 - - gmx:100818806 753.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03070 11 50237553 50239166 Vimu4g00386 4 2755001 2756362 PCT