Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00379 ATGGAATACCCTTTTTCCTCCAAGGAAAGAGAAATTGGGGATTGGCAATCTTTCGGAAATCAGTTGGTGGGATCAACATCATTAGATAGCAGAATGAGCAATCCAATATCAGAGGATATGCCCAATAGCTTCTCAGAGCTCATGAACTTTGATACTTATGCTGGTCTGTGCACCAGCCCATCCATATCTGATCAGATTTTAGCCAATGAGCTTCCGTCCTTTGCTTCATTACCATATTCATTGCCTGATGGATTCAACCTAGTCCAACAGAACAATGGACAATGCTATATGTCAGGAGTTGGTAGAAATGACAACGATATGGAAAGCTCCCCCATTTATGGGGAGAAAGTTGCCTGTCAGCAAGTGGACACCCTTCTTGGTTTCTTAAATGATGCAAATGAAGCAAATAACTTGAATTCTAAGCTAAAAATTAATGGCTCTTCTCAACATCTGAATAACTCTGATGCAGGAAATTGTATAATGTCCAGGCCACCTGCTTTATCACTTGATGAGAGAATGCTGAGGGCTTTGTCCTTCTTTAAGGAATCAGCTGGAGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGAATGGCGATCAATTCATCTTAAGCACGAGTGAACAACCTTATTTGCTAGATCAAATGCTAGCAGGGTACCGTGAAGTGTCCAGGACATTTACATTTCCAGCAGAAGGAAAATCTGGTTGTTTCCTAGGACTTCCTGGTCGTGTATTTACCTCCAAAGTTCATGAGTGGACGTCAGATATTGGTTATTACAGTATGAATGAGTACCTAAGGTTCGAGCATGCAATTAATCACCATGTTCGTGGATCAATTGCATTTCCCATTTTTGAAGTGCACTCGGAATTGTTGTGTTGTGCTGTACTGGAAATTGTCACTACAAAGGAAAAGCCAGATTTCAACAGAGAATTTGAAATTGTTCGCCGTGCACTCCAGCTTGTAAATTTAAGCACTGCCAAGCCTCTTCGATGTCTTCCCCAGTGTCTTTCAAACAACAAAAAGGCTACTTTGACTGAGATAGTTGATGTGTTACGTTCTGTCTGTCATGCACATAGATTACCACTGGCACTGACATGGCTTCCCTGTTGTTACACTGAGGGGTCAAGAGGTGAAGTTACTAGGATACGAACTAAAGGGTGCCATTCAACTATTAGTGGAAAAAACATACTCTGCCTTGAAGAATCTGCTTGCTATATAACTGATAGAGCATTGGCAGGATTTGTCCGTGCATGCACAGAATATCATATTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTTCGATCAAATCATCCTTTCTTTTGTCCTGATGTGAAGGCATATGATATTAGTGAATATCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATCATGATGATTACATATTGGAATTCTTTCTGCCTGTTAACATGAGAGGGGGTTTAGAGCAGCAACTTTTATTAGACAATCTCTCAGGTACAATGCAGAGAATTTGTAGTAGTTTGAGGACGGTGTCAGATGCTGAATTATCAAGAATAGAAAGTTCACAACAAGGATTTGAAAATAAAAATGCCCCCTATTTTCCTCCTTTGTCATGTCAAAACTCTGGAGTACCATTAATAAATGGTGACTATCATTCTGTTCCAATGATGCCATCGACGCCAACAAACGCAGGAGGCAATGAAATTGAGCCTTCTGCTAATCAGGGAAGAAATGGAGCAAAAAGACAGGTCCAGAAAAATAGAAGTACATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAACATCGGTGTTTGCCCGACAACTCTGAAAAGGATATGTAGGCAACATGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAACCGATCACTGAAGAAGATACAGACTGTGCTGGACTCTGTCCGAGGAGTGGAGGGAGGGTTGAAGTTTGATCCCTCTATGGGGGCATTCGTGGCAAGAGGATCAATCATCCAGGAAACTGATGCACATAAAAGTCTTCTGTTTCCTGAGAAAAATATTATAAAAGACCCTGCACATATTACACAAGAAGCAGTCCCGGTACCTCGTGCACCTTGTAATGAAGTTGAGAATTTTTCATTTAAGTTGGAGGAAGAATTGAAGAAAACCAATGTTTTTTCCGTTGGTTGTTGTGAAGATTCAAAATCAATGCCAATTGATGATGGGTCATGCGAAATGGAAAGCCTTTGCACCAAGGTGCAGGATTGTCCTGAACAAGCTTGTTTGGGCTCTGTTCTTCCAAAAGAACAGGAGAAATGGACTCGGAACAAGAGTGGTTTGAGAGTAGAAAACTTTAAATGCAGTATTCTTGGTCAGAGTTCAAATTCCTTGATTGGTAAGGAGATGGACATTGGTGTAGATGGGGATGCTGAGGTTGTTGAACCTAACCACCCCAGTTCCTCAAGCTTGACAGACTCATCTAATGACTCTGGTTCAATGATGCATAGCATTTCATCAGGTTCTAAGAGCTTCAAGAACCATAATCAGTCCAAAGTTAAGTCAACCATCGTTGATAGTGGGTCAAAACTAATTGTCAAAGCTATCTATAGAGAAGACACCATTCGTTTCAAGTTCGACCGATCTGCTGGTTGTTTCAGGTTATATGAAGAAGTTGCAGCAAGATTCAAACTACAAACTGGGTCATTCCAACTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGATGCTGATTTGCAAGAGTGTCTAGACATATTGGATGATATTGGTACATGCAGTGTCAGGTTTCTTGTTCGTGATTTGCCTTCCATTTTAACCAGTTCTGGCAGTAGTAATAGCTACTTGGGAGGCAGCTCATAG 2940 0.4095 MEYPFSSKEREIGDWQSFGNQLVGSTSLDSRMSNPISEDMPNSFSELMNFDTYAGLCTSPSISDQILANELPSFASLPYSLPDGFNLVQQNNGQCYMSGVGRNDNDMESSPIYGEKVACQQVDTLLGFLNDANEANNLNSKLKINGSSQHLNNSDAGNCIMSRPPALSLDERMLRALSFFKESAGGGILAQVWVPIKNGDQFILSTSEQPYLLDQMLAGYREVSRTFTFPAEGKSGCFLGLPGRVFTSKVHEWTSDIGYYSMNEYLRFEHAINHHVRGSIAFPIFEVHSELLCCAVLEIVTTKEKPDFNREFEIVRRALQLVNLSTAKPLRCLPQCLSNNKKATLTEIVDVLRSVCHAHRLPLALTWLPCCYTEGSRGEVTRIRTKGCHSTISGKNILCLEESACYITDRALAGFVRACTEYHIEEGKGIAGKALRSNHPFFCPDVKAYDISEYPLVHHARKYNLNAAVAIRLRSTYTNHDDYILEFFLPVNMRGGLEQQLLLDNLSGTMQRICSSLRTVSDAELSRIESSQQGFENKNAPYFPPLSCQNSGVPLINGDYHSVPMMPSTPTNAGGNEIEPSANQGRNGAKRQVQKNRSTSEKNVSLSVLQQYFSGSLKDAAKNIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVRGVEGGLKFDPSMGAFVARGSIIQETDAHKSLLFPEKNIIKDPAHITQEAVPVPRAPCNEVENFSFKLEEELKKTNVFSVGCCEDSKSMPIDDGSCEMESLCTKVQDCPEQACLGSVLPKEQEKWTRNKSGLRVENFKCSILGQSSNSLIGKEMDIGVDGDAEVVEPNHPSSSSLTDSSNDSGSMMHSISSGSKSFKNHNQSKVKSTIVDSGSKLIVKAIYREDTIRFKFDRSAGCFRLYEEVAARFKLQTGSFQLKYLDDEEEWVMLVNDADLQECLDILDDIGTCSVRFLVRDLPSILTSSGSSNSYLGGSS 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00379 979 ProSiteProfiles PB1 domain profile. 879 961 IPR000270 GO:0005515
Vimu4g00379 979 MobiDBLite consensus disorder prediction 827 863 - -
Vimu4g00379 979 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
Vimu4g00379 979 Pfam RWP-RK domain 603 651 IPR003035 -
Vimu4g00379 979 PANTHER PROTEIN NLP8 138 971 IPR045012 GO:0003700
Vimu4g00379 979 CDD PB1_NLP 880 960 IPR034891 -
Vimu4g00379 979 SUPERFAMILY CAD & PB1 domains 874 963 - -
Vimu4g00379 979 Pfam PB1 domain 882 960 IPR000270 GO:0005515
Vimu4g00379 979 Gene3D - 876 957 - -
Vimu4g00379 979 MobiDBLite consensus disorder prediction 832 863 - -
Vimu4g00379 979 SMART PB1_new 879 961 IPR000270 GO:0005515
Vimu4g00379 979 MobiDBLite consensus disorder prediction 571 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00379 Vimu-Chr4 2693632 2698724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00379 1 976 NLP Transcription Factor Family AT2G43500 49.146 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vimu4g00379 PB1 4e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00379 - - gmx:100804426 1507.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00379 4 2693632 2698724 Vimu4g00379 4 2693632 2698724 ECH