Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00373 CCTAATGTGCAGCCAGTGGAAACTGCTCCTATTAGAATTCCTCTGCAACTTGACCTTAAAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGAAGAAGACTGTACCGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGGATCGAAAACCTTATCTTCACGAGTCCCGCCATCTACATGCAGTGAATAGAGCAAGAGGTGCTGGTGGACGCTTTCTCAACACTAAAAAGCTTCAACAATCAACTCGTACTCGTGGAAATACTGCAGAATCTAACATGCATCAAATAGAAAACTACAGAGATGGTGATGATACCACATATGCATCTAACACTGCTGCAAGAATTATGCAGAATTGTACATCTGATAAGGGTGGTGGCACCACTCAGCAGCAGCCTCTATTTGTCTACATGTGA 429 0.4196 PNVQPVETAPIRIPLQLDLKEEPIYVNSKQYHAILRRRLYRAKLEVQNKPIKDRKPYLHESRHLHAVNRARGAGGRFLNTKKLQQSTRTRGNTAESNMHQIENYRDGDDTTYASNTAARIMQNCTSDKGGGTTQQQPLFVYM 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00373 142 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 115 IPR001289 GO:0003700|GO:0006355
Vimu4g00373 142 MobiDBLite consensus disorder prediction 79 100 - -
Vimu4g00373 142 MobiDBLite consensus disorder prediction 69 100 - -
Vimu4g00373 142 SMART cbf3 19 80 IPR001289 GO:0003700|GO:0006355
Vimu4g00373 142 Gene3D - 20 81 - -
Vimu4g00373 142 PRINTS CCAAT-binding transcription factor subunit B signature 23 45 IPR001289 GO:0003700|GO:0006355
Vimu4g00373 142 PRINTS CCAAT-binding transcription factor subunit B signature 54 77 IPR001289 GO:0003700|GO:0006355
Vimu4g00373 142 ProSitePatterns NF-YA/HAP2 subunit signature. 25 45 IPR018362 GO:0003677|GO:0016602
Vimu4g00373 142 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 22 77 IPR001289 GO:0003700|GO:0006355
Vimu4g00373 142 ProSiteProfiles NF-YA/HAP2 family profile. 20 80 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00373 Vimu-Chr4 2648598 2649098 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00373 12 111 CCAAT-HAP2 Transcription Factor Family AT1G17590 56.250 5.17e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vimu4g00373 CBFB_NFYA 3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00373 K08064 - gmx:100803893 221.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00373 4 2648598 2649098 Vimu4g00373 4 2648598 2649098 ECH
Vimu4g00373 4 2648598 2649098 Vimu11g03030 11 49916762 49919425 PCT
Vimu5g02320 5 34116246 34118261 Vimu4g00373 4 2648598 2649098 PCT