Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00372 ATGGAAGCGCGAAGTCGCTCCGTGGAAGACATATTCGAGGATTTCAAGGGGCGAAGAGCAGGCATCATCAAAGCCCTCACCACCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGTACATGTACTGAAATTAGCTCGATATTCGAGCATGACTGTTTTTCTTGGTCTAGTGTTTGATTTTCACCGTACCCTTCTTGAGGCTCTTGCTATAAAGGGATGTCAATTCAATATGGCTAGTTATGAATTTGTTTATATATCCTTTGTTTTTATTCTTTCAGAGAAGGAGAATTTGTGCTTATATGGATTACCCAGTGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTGCTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCAGTATGATAAACGAACTACCAACAATATTTGAAGTTGTTACTGGTGGTGGAACAAAGAAGCCAGTTAAAGAGAAGTCTTCAGTTTCGAACAACAGTGGAAACAAATCTAAGTCTAACTCTAAAGTGCGGATTTCCGAAACCCAGGGCAGACAGTCAAAGGCCTTGTTACAACCAAAAGATGAGGATGAAGGACTAGAAGAGCAAGATGAAGATGAGCATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGCACTGATGAGTTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGCAAATGCGTGAAGATAACCCCTGCTAGGGCAGAGCACATCAAGCAATACAAGTGTCCATCGTGCAGTAACAAGAGAGCTCGCTAA 915 0.4284 MEARSRSVEDIFEDFKGRRAGIIKALTTDVEDFYSQCDPVHVLKLARYSSMTVFLGLVFDFHRTLLEALAIKGCQFNMASYEFVYISFVFILSEKENLCLYGLPSEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVTGGGTKKPVKEKSSVSNNSGNKSKSNSKVRISETQGRQSKALLQPKDEDEGLEEQDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00372 304 Pfam Alfin 7 40 IPR021998 GO:0006355|GO:0042393
Vimu4g00372 304 Pfam Alfin 94 189 IPR021998 GO:0006355|GO:0042393
Vimu4g00372 304 CDD PHD_AL_plant 251 301 IPR044104 -
Vimu4g00372 304 ProSiteProfiles Zinc finger PHD-type profile. 249 301 IPR019787 -
Vimu4g00372 304 SMART PHD_3 251 299 IPR001965 -
Vimu4g00372 304 ProSitePatterns Zinc finger PHD-type signature. 252 298 IPR019786 -
Vimu4g00372 304 Pfam PHD-finger 252 301 IPR019787 -
Vimu4g00372 304 MobiDBLite consensus disorder prediction 192 245 - -
Vimu4g00372 304 FunFam PHD finger alfin-like protein 244 300 - -
Vimu4g00372 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 300 IPR013083 -
Vimu4g00372 304 PANTHER CPG BINDING PROTEIN 5 304 IPR045104 GO:0006355|GO:0042393
Vimu4g00372 304 SUPERFAMILY FYVE/PHD zinc finger 241 302 IPR011011 -
Vimu4g00372 304 MobiDBLite consensus disorder prediction 197 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00372 Vimu-Chr4 2643349 2647207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00372 94 304 Alfin-like Transcription Factor Family AT3G42790 74.882 6.51e-100 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vimu4g00372 Alfin 7.6e-49 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00372 K26274 - oeu:111406251 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03029 11 49903764 49912295 Vimu4g00372 4 2643349 2647207 ECH
Vimu10g03113 10 41868207 41870735 Vimu4g00372 4 2643349 2647207 ECH
Vimu4g00372 4 2643349 2647207 Vimu4g00372 4 2643349 2647207 ECH
Vimu4g00372 4 2643349 2647207 Vimu11g03029 11 49903764 49912295 PCT