Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00367 ATGACACCACACAAGAACAATGGAGAGACTGATTCTACAAAACTATCTGATGAAACCAGTTCTTTACAAACTTCATCCAATCAAAGTTTCCTTAAAGAAGACACTTCAAGGTTGTTTGATCATCAAACCAGTGAGACATCACATGGAAAACAAAATGTAGTCATTAATTCGAATCGTAGGAGCAAATCTTCCAAAAAGTCTCCGACAACGAAGCATGAAAGTATTAGGCAAGAAGAGGGAGACATGCATGAAGAAGAAGAAAAAGAAGGGAGGAATAAACCATTAAATGAAATTGCACCAAACAAAGTTCTATTTAAAAGATACAACATTAAAGAAATTGAAGTAGCAACTAATTACTTTGACAATGCCCTGAAAATCGGTGAAGGTTCATATGGACCTGTTTTCAAAGGGGTGCTTGATAACATTGATGTTGCTGTCAAGGCTCTCAGACCTGACATAACTCAAGGGGAGAAGCAGTTTCACCAAGAGGTTAGTGTTTTGAGCACAATAAGACATTCAAACATGGTTAAACTTTTGGGTGCATGTCCGGAGTATGGATGCCTTGTGTATGAGTACATGGAAAATGGAAGTTTAGAAGATCGTCTATTCCAAAAAGATAACACAGCAGCAATTCCATGGAAAGTTAGATTCAAAATAGCATCAGAAATTGCCACAGGCCTTCTTTTCCTACATCAGACAAAGCCTGAGCCTATTGTGCACAGAGACCTCAAACCTGCAAATATTCTGTTGGACTGTAACTATGGTAGCAAGATCACTGATGTGGGTTTGGCAAGGCTAGTTCCACCTGCTATACCGAACAAAAGCACTCAATACCATAAGACAACTGCAGCTGGTACATTTTGCTACATTGATCCAGAATATCAGCAAACAGGACTATTGGGAGTTAAATCAGATATTTATTCACTAGGTGTAGTGCTGTTGCAAATTATAACTGGAAAGCCTCCAATGGGTGTGGCTCACTTAGTTCAAGAGGCTATAGAAAAAGGTACATTTTCTGAGGTTCTTGATCCTAATGTCATGGATTGGCCTGTTGAGGACACTTTGTCATTTGCTAAGTTGGCTTTGAAGTGTTGTGAGATGAGAAAACGAGATAGACCAGATCTTGCTTCTGTCATTTTGCCAGAATTGACTCGGCTTACAAATTATTAG 1170 0.3889 MTPHKNNGETDSTKLSDETSSLQTSSNQSFLKEDTSRLFDHQTSETSHGKQNVVINSNRRSKSSKKSPTTKHESIRQEEGDMHEEEEKEGRNKPLNEIAPNKVLFKRYNIKEIEVATNYFDNALKIGEGSYGPVFKGVLDNIDVAVKALRPDITQGEKQFHQEVSVLSTIRHSNMVKLLGACPEYGCLVYEYMENGSLEDRLFQKDNTAAIPWKVRFKIASEIATGLLFLHQTKPEPIVHRDLKPANILLDCNYGSKITDVGLARLVPPAIPNKSTQYHKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGVVLLQIITGKPPMGVAHLVQEAIEKGTFSEVLDPNVMDWPVEDTLSFAKLALKCCEMRKRDRPDLASVILPELTRLTNY 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00367 389 ProSiteProfiles Protein kinase domain profile. 120 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00367 389 MobiDBLite consensus disorder prediction 1 33 - -
Vimu4g00367 389 SMART serkin_6 120 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00367 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Vimu4g00367 389 MobiDBLite consensus disorder prediction 45 63 - -
Vimu4g00367 389 PANTHER OS02G0152300 PROTEIN 68 388 - -
Vimu4g00367 389 MobiDBLite consensus disorder prediction 1 94 - -
Vimu4g00367 389 FunFam Os07g0541700 protein 193 285 - -
Vimu4g00367 389 Coils Coil 389 389 - -
Vimu4g00367 389 Pfam Protein kinase domain 124 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00367 389 Gene3D Transferase(Phosphotransferase) domain 1 193 388 - -
Vimu4g00367 389 PIRSF ILK 52 389 - -
Vimu4g00367 389 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 96 192 - -
Vimu4g00367 389 MobiDBLite consensus disorder prediction 67 94 - -
Vimu4g00367 389 SUPERFAMILY Protein kinase-like (PK-like) 99 379 IPR011009 -
Vimu4g00367 389 Gene3D Phosphorylase Kinase; domain 1 98 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00367 Vimu-Chr4 2630664 2632030 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00367 73 388 Receptor kinase-like Gene Family AT5G12000 64.241 1.04e-152 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu4g00367 Pkinase 1.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00367 - - vra:106760620 726.087