Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00357 ATGCAGTTAGCTGTAGCACAGTTTGATGTGGAATCTTTTATTCTTCGTTATATAGGTTTTGAGAGGCCTTCTGCAATACAGCAAAGGGGGATTGTTCCTTTCTGCAAGGGTTTGGACGTGATTCAGCAGGCTCAGTCTGGAACTGGAAAGACAGCTACATTCTGTTCCGGAATTTTGCAGCAACTAGATTATGGATTGGTTCAGTGCCAGGCTTTGGTTTTGGCACCAACAAGAGAGCTTGCACAGCAGATTGAAAAGGTTATGCGAGCTCTCGGTGATTACCTTGGCGTCAAGGTTCATGCTTGTGTTGGTGGGACCAGTGTCCGTGAGGATCAGCGCATTCTCCAAGCTGGTGTACATACTGTTGTTGGCACTCCTGGGCGTGTGTTTGACATGTTGCGCAGACAGTCTCTTCGCCCTGATCACATAAAGATGTTTGTTTTGGATGAGGCTGATGAAATGCTTTCACGTGGTTTCAAGGACCAGATCTATGACATCTTCCAGCTACTGCCCGGTCAAATTCAGGTTGGCGTGTTCTCTGCTACAATGCCGCCCGAGGCCCTGGAAATTACGAGAAAGTTCATGAATAGGCCAGTGAGAATCCTGGTAAAGCGTGATGAATTGACCCTTGAGGGTATCAAGCAGTTTTATGTGAATGTTGACAAGGAAGAATGGAAACTGGAGACATTATGCGACCTTTATGAGACTTTGGCTATAACCCAGAGTGTGATCTTTGTGAACACAAGGCGCAAGGTGGACTGGCTCACTGACAAGATGCGAAGCAATGATCACACAGTCTCAGCCACTCATGGAGACATGGACCAAAACACTCGTGATATCATCATGCGTGAATTTCGCTCTGGCTCTTCTCGAGTTCTAATCACCACTGACCTCTTGGCTCGTGGTATAGATGTACAGCAAGTGTCTTTGGTTATAAACTATGATCTGCCTACCCAACCTGAAAATTATCTTCACCGCATAGGGCGAAGTGGGCGTTTCGGAAGAAAAGGTGTTGCCATAAACTTTGTGACACTGGAAGATGCCAGAATGCTATCTGATATTCAGAAGTTCTACAATGTCACCGTAGAGGAGTTGCCCTCAAATGTTGCTGATCTGCTCTGA 1122 0.4626 MQLAVAQFDVESFILRYIGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHTVVGTPGRVFDMLRRQSLRPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPGQIQVGVFSATMPPEALEITRKFMNRPVRILVKRDELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSNDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTLEDARMLSDIQKFYNVTVEELPSNVADLL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00357 373 Pfam Helicase conserved C-terminal domain 226 334 IPR001650 -
Vimu4g00357 373 SMART helicmild6 253 334 IPR001650 -
Vimu4g00357 373 Gene3D - 209 373 IPR027417 -
Vimu4g00357 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 354 IPR027417 -
Vimu4g00357 373 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 147 155 IPR000629 -
Vimu4g00357 373 FunFam Eukaryotic initiation factor 4A-II 5 207 - -
Vimu4g00357 373 FunFam Eukaryotic initiation factor 4A-III 208 373 - -
Vimu4g00357 373 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 11 357 - -
Vimu4g00357 373 SMART ultradead3 19 216 IPR014001 -
Vimu4g00357 373 CDD DEADc_EIF4A 18 202 - -
Vimu4g00357 373 Gene3D - 9 208 IPR027417 -
Vimu4g00357 373 CDD SF2_C_DEAD 213 343 - -
Vimu4g00357 373 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 212 373 IPR001650 -
Vimu4g00357 373 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 31 201 IPR014001 -
Vimu4g00357 373 Pfam DEAD/DEAH box helicase 25 186 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00357 Vimu-Chr4 2561388 2562672 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00357 19 373 Eukaryotic Initiation Factors Gene Family AT1G72730 92.676 0.0 688
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00357 K03257 - gmx:100777628 699.508