Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00356 ATGACGCGGGGGAGGATCAGGGCAAGACTCCGTAGGAGGAGCCATCTTTACACATTTGGTTGTCTGAAGCCAACCACCACTGAGGAGTTGCCCTATTCACTTCAAGGTCCTGGCTACTCGCGAACAGTCTTCTGCAACCAGCCTCAACTCCATGAAAAGAATTCCTTATTTTACTGCAAGAATGTTATATCAACCACCAAGTACAATGTCATAACGTTTCTTCCTAAGGCATTGTTTGAGCAGTTTCGAAGGGTTGCTAACATATACTTTCTTTTGGCTGCTTGCCTTTCGGCTTCTCCAATTTCGCCTTTTAGCGCACTGAGCATGGTTGCACCTCTGGCGTTTGTTGTGGGACTTAGTATGGTGAAGGAGGCATTGGAGGATTCTCGCAGGTTCTTTCAGGATGTCAAAGTTAATCGACGGAAAGTTTGTCTCCATATAGGCAATGGCACTTTCGGCCTAAGATCGTGGCAGAAGATTGTGGTTGGGGATGTGGTCAAAGTAGAAAAAGATCAATTTTTTCCAGCCGACTTGCTTCTCTTGGCGTCAAGTTATGAGGATGGAATATGCTATGTGGAAACAATGAATTTAGATGGAGAGACCAACTTGAAGGTGAAGAGATCCTTGGAGGCTACCTTGTCTCTGGATCACGACGAGGCTTTTAAGGATTTCTCTGGAACAATATATTGTGAAGATCCAAATCCCAATCTTTACACTTTTATTGGGAACTTTGAGCATGAAAATCAGGTTTATCCTCTTGATCCTAGTCAAATTCTTCTCAGAGATTCGAAGCTTAGAAATACTGATCATGTTTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAGAGAAGCACAATAGAAAAAAAGATGGATTATATCATATATACACTTTTCACTGTCCTTATATTGATATCTTTTATTAGTTCAATAGGATTTGTTGCAAAGACCAAATACCAAGCCCCAACTTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTTTGATCCTGAGAAAATTGGATTGGCTGGAATGAGCCATCTGATTACTGCACTCATTCTCTATGGATATTTGATTCCTATCTCGCTTTATGTTTCAATTGAGGTTGTGAAGGTATTACAGGCAACCTTCATTGATCAAGACATTCAAATGTATGATGATGAAACTGGAACTCCAGCTGAAGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGATAAAACTGGCACTTTAACTTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCCGGTACTGCATATGGTGTTCGTTCCAGTGAGGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGAGCCGGACATGGATATGTCTAATTTTTCCATTCCTGAGGAGAGTAAAGTGCCATGGGAAAATATCACTGTAGATGAAGAATCTGAACTTGGGAATGTTGCTAATTCCAAGAATGATGAAGATCAAAGGACTTCCATAAAGGGATTTGGTTTTGAAGATGATCGCCTCATGAATGGTAACTGGATGAAAGAACCCAATGCCGATGTCCTTTTACTGTTTTTCCGGATATTAGCAATTTGCCATACTGCCATCCCGGAACTAAATGAGGAGACCGACAATTGTACATATGAGGCCGAGTCACCTGATGAAGGGGCTTTTCTAGTAGCAGCCAGAGAATTTGGTTTTGAGTTTTATAGGAGAACTCAATCAAGTGTTGTCATCCGCGAAAGATTTGCTGCCTCGGGACAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGCATGTCAGTGATAGTGCGTGACGAGGAGGGAAACATCATTCTTTTTTGCAAAGGAGCTGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATGTATTTGGACGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGCTTGAGAACACTAGCCTTGGCCTATAGAGAGCTTGACGACCTAGAGTACTCTGTTTGGAATAGCAAGTTTCAGAAGGCCAAAACAGCTATTGGGCCTGACAGAGAGGCAATGCTTGATCAGGTTTCAGATGTTATGGAAAGAGAGTTGATACTTGTTGGCGCTACTGCCGTGGAAGATAAACTACAGAAAGGGTCAAAATATCTTCTTGCTTCGCTCTTTGCCTCAACATTTTGTTCTCCTCAGGTGCCACAATGCATTGACAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACTGCAATCAACATTGGATTTGCTTGTAGTTTACTTCGACAGGGCATGAGGCAAATCTGTATCACAATGAATTCAGATTCAGCAACCAATGATGCGAAAGAGGTAATCAAAGGAAACATCTTGAATCAAATCACCAATGCCTCGCAAATGATAAAGCTAGAAAAGGATCCACATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTAACGTATGCTTTAGAAGATGATGTCAAACTCCAATTTTTGGGACTGGCTGTTGGCTGTGCGTCTGTTATTTGTTGTCGTGTGTCTCCAAAGCAAAAAGCACTGGTTACAAGGCTGGTGAAAGAAGGAACTGGGAAGACCACTTTGGCCATTGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGAAGCATATACCATTTGTTGAAGTTGTGGAACTCAAGGTTTTTAATTCTTTTCAGGCAGTAATGGCCAGTGACTTTTCTATTGCCCAATTCCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGGCCTTTGCGGGCTTCTCTGGACAATCGGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTTACATCATTGCCTGTCATTTCTCTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGTTTACAGTTTCCTGCACTGTATCAGCAAGGACCCAAAAACTTGTTCTTTGACTGGTATAGAATCTTGGGATGGATGGGGAATGGTCTTTATTCCTCCCTCGTGATCTTCTTTCTTGTCATTATCATCTTCTATGACCAAGCATTCCGTCCCAATGGCCAGGTCGCAGACATGGCTGCTGTTGGTACCACGATGTTCACTTGCATCATCTGGACTGTCAATTGCCAGATTGCACTGACAATGAGCCATTTCACATGGATTCAACACCTCTTTGTGTGGGGCAGCATAACCACTTGGTACCTCTTTCTCTTGTTATACGGCATGCTTCCACCAAAACATAGCAAATCTGCCTACCAAATATTGGTGGAGGTTCTTGCTCCTGCTCCTATTTATTGGACAACAACCCTATTAGTTACAATTACATGCGTTCTTCCATATCTCGCCCACATATCCTTCCAAAGATGTGCTCATCCCATGGATCACCACATTATCCAAGAAATCAAATACTACAAGAAGGACATTGAAGATCAGCACATGTGGACGAGGGAGCGGTCTAAAGCAAGGCAAGAAACGAAGATTGGATTCACGGCAAGAGTGGAAGCAAAGATTAGGCATTTTAGAAGTAAGTTGCAGAAGAAGCAGCAGCAGCAGTCTTCAGTGGGGTCTTCAGTGGGGTCTTTGTCCCCATTATGA 3741 0.4218 MTRGRIRARLRRRSHLYTFGCLKPTTTEELPYSLQGPGYSRTVFCNQPQLHEKNSLFYCKNVISTTKYNVITFLPKALFEQFRRVANIYFLLAACLSASPISPFSALSMVAPLAFVVGLSMVKEALEDSRRFFQDVKVNRRKVCLHIGNGTFGLRSWQKIVVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDHDEAFKDFSGTIYCEDPNPNLYTFIGNFEHENQVYPLDPSQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQAPTWWYLRPDNIEYQFDPEKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFIDQDIQMYDDETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMASDLEEPDMDMSNFSIPEESKVPWENITVDEESELGNVANSKNDEDQRTSIKGFGFEDDRLMNGNWMKEPNADVLLLFFRILAICHTAIPELNEETDNCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVIRERFAASGQVVQREYKILNLLDFTSKRKRMSVIVRDEEGNIILFCKGADSIIFDRLSKNGKMYLDATTRHLNEYGEAGLRTLALAYRELDDLEYSVWNSKFQKAKTAIGPDREAMLDQVSDVMERELILVGATAVEDKLQKGSKYLLASLFASTFCSPQVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMRQICITMNSDSATNDAKEVIKGNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDVKLQFLGLAVGCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQKHIPFVEVVELKVFNSFQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFRPNGQVADMAAVGTTMFTCIIWTVNCQIALTMSHFTWIQHLFVWGSITTWYLFLLLYGMLPPKHSKSAYQILVEVLAPAPIYWTTTLLVTITCVLPYLAHISFQRCAHPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRHFRSKLQKKQQQQSSVGSSVGSLSPL 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00356 1246 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 42 1217 - -
Vimu4g00356 1246 SUPERFAMILY HAD-like 418 928 IPR036412 -
Vimu4g00356 1246 Gene3D - 112 289 - -
Vimu4g00356 1246 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1166 IPR023298 -
Vimu4g00356 1246 SFLD Haloacid Dehalogenase 405 966 - -
Vimu4g00356 1246 Pfam Phospholipid-translocating ATPase N-terminal 43 109 IPR032631 -
Vimu4g00356 1246 FunFam Phospholipid-transporting ATPase 119 289 - -
Vimu4g00356 1246 FunFam Phospholipid-transporting ATPase 591 722 - -
Vimu4g00356 1246 Gene3D - 729 932 IPR023214 -
Vimu4g00356 1246 SFLD p-type atpase 405 966 IPR044492 -
Vimu4g00356 1246 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 686 IPR023299 GO:0000166
Vimu4g00356 1246 Gene3D - 433 449 IPR023299 GO:0000166
Vimu4g00356 1246 Pfam Cation transport ATPase (P-type) 547 651 - -
Vimu4g00356 1246 SUPERFAMILY Calcium ATPase, transduction domain A 143 287 IPR008250 -
Vimu4g00356 1246 FunFam Phospholipid-transporting ATPase 724 928 - -
Vimu4g00356 1246 NCBIfam phospholipid-translocating P-type ATPase 58 1182 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Vimu4g00356 1246 CDD P-type_ATPase_APLT_Dnf-like 61 1056 - -
Vimu4g00356 1246 PRINTS P-type cation-transporting ATPase superfamily signature 897 916 - -
Vimu4g00356 1246 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Vimu4g00356 1246 Pfam Phospholipid-translocating P-type ATPase C-terminal 975 1174 IPR032630 -
Vimu4g00356 1246 Gene3D - 420 432 IPR023214 -
Vimu4g00356 1246 Gene3D - 491 728 IPR023299 GO:0000166
Vimu4g00356 1246 MobiDBLite consensus disorder prediction 1228 1246 - -
Vimu4g00356 1246 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Vimu4g00356 1246 MobiDBLite consensus disorder prediction 1225 1246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00356 Vimu-Chr4 2547887 2553748 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00356 1 1245 Primary Pumps ATPases AT1G17500 71.011 0.0 1843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00356 K01530 - gmx:100778710 2120.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00356 4 2547887 2553748 Vimu11g02990 11 49528834 49534788 PCT