Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00355 ATGGACCACCAGAAAGAGAGAATTAAGAATGGGTGCCAGAAGATTTTGGAAGGAATAAATTCGATGTCTTTGTCAAACTTAGATGATCAGCAAGTGCATTCTTTAGTGATGATGAGAGAAATAGCACGTGGGGTTGTTGATGACCGAGATAGAAAGGTGACTAGGAGTGATGTCATCACTGCCTTGCGCTACAGCATTGAAAAAATGGTGTGTGCATCCAGGGATATCATTCAGATATTAAGTAGAATGTCCTTTGAAGGTTTGGATGACCAAAGGATGCATTTAGTGACGAGGATGAAAGAAATTGCACATGGGGTTATTGATAAACAACCTCGAGTTGCAATAGCTAGGCCTAACTTGCTTGCCGAAGAAGTTGGCTTTGTGGACGAAGGAATGCAAGATAGTCTGGTGGTTGAGTCAGCCAAGATTTGCAATGGGGATGCCCTAATTGATGGGGCACATAGCATGACTAACGAAGATGAGATGTTGGATGTAGAACACGTTTTAAGGTTTGAGAATGAGATAGATGAAATACAGGAGTCTTTGTTACCATGCTTTGAGCAATTTCTTATGTGGCCGCCTAATGATTGTGTCACCATTGAGTGGGTTCAGGATGTGATGGTCATCCTTGAGCAGGCCTCACAGAAGATGTTGCCATCGGAATTCTGTCATGTTGTGCCCACCCTTTTGGTGGACAAATTGACAGGTGCTGCTTGCAGTATTTTGTGTAAAGAACCAAACTGTGTGGAGATCAATTGCCAAGGAGAAGAAGATTCAAGAGTAATCGTAGTTGGTGATATTCACGGGCAGTTTCATGATTTAATGTTTCTTTTCAAGCATGAGGGAGTGCCCTCTGAGAACCAGATCTACGTTTTTAATGGAAATTATGTAGATAAAGGAGCTTGGGGAATTGAAGTATTTTTGGTCTTACTGGCTTGGAAGGTATTGATGCCTCACAGAGTATTTCTACTTCGTGGAAATCATGAATCAAGATATTGCACTGCGAGATATGGTTTTAAGAAGGAGGTGTGGGCCAAATATGGTGATCAAGGTGATGACGTCTACAATAAATTCCTAGAGTGTTTCAAGGAGCTTCCATTAGCTTCAGTTATTGCCAACTGTGTTTATACTACTCATGGAGGACTTTTCCGTAGCATACATGCAGCCCCTTCACAGAGACCAAAACGGAATAAAACACATAGAGTGGATCTTGGCTCTTTAGCCGAGTTATTTAATGTTAAAAGATCCTCTATAGATTGTCCTTATGAAGGTCCTAACATATTGTTGAGTGATGTTCTCTGGTCAAGACCATCAAACAGGTATGGTCTGAGGGATAATACAGGCCAAAAGTTAGGTTTATGGTGGGGTCCTGATTGCACTGAGGAATTTCTAAAGCACCACAGTTTAAAGCTGATTATCAGATCACATGACGGACCCGATTCAAGGGCTGGTAAAGATAATGATCTTGGGAATATGCTAAGAGGATACAGCATAGATCATGATGGAGAATCGGGAAAACTTTGTACACTTTTTAGTGCTTCAGACTATCCACAGTTTGGTAAAAGGAGATGTAACAGTAAGGGGGCATATGCCGTATTGAAGTCACCTGATTTTGCCAGTCCTTCCTTTCACTCATTCAAAGGGACAGAGAGACCAATGGTGGATCCCTACGTTGATTTTGGTGCTAATAACATTGATTCGAGTAAACTAGACTCTTCTCAAAGTGTATCCTGGATTAAGGACTTTTGTGTGAATATGGATCAACTTGAGATGCCCATAACATTTTCTCATAATCATTATGTCATATTGTTGGCTAGAGATGGAAACACTGAATCAGCTTACTTCTGTGCTGACATGAATGCACAGGCTTCAACCTCTACCCTTTCTGCTTCTGAAAGATTTTATCCAGAAGGGAGGAGACCTGAGTTTGACTTTGGGGCATTAGGTATATACAATGCCCCATGTTGGAGTGTTGAGCTTCCTGATGGATCAGGTGGCACTCAAGTTGTGGAGGTTCCAAGGGCATCACTGGTTGAAGGGTTACCTCTGCCTCCAAACATACAGGAGCCACACAAGGCTGCTTATGAGTATTTATTTGAGCTAGTTGCTGGCCTGAAACATATGATTGTAACAAGGGAGACTGAGAACAGGGCCCGTGTGTCTGCTTTGAGAAGTAGAGCTAGGAAAAGAAAGGGTCAGGGATAG 2205 0.4209 MDHQKERIKNGCQKILEGINSMSLSNLDDQQVHSLVMMREIARGVVDDRDRKVTRSDVITALRYSIEKMVCASRDIIQILSRMSFEGLDDQRMHLVTRMKEIAHGVIDKQPRVAIARPNLLAEEVGFVDEGMQDSLVVESAKICNGDALIDGAHSMTNEDEMLDVEHVLRFENEIDEIQESLLPCFEQFLMWPPNDCVTIEWVQDVMVILEQASQKMLPSEFCHVVPTLLVDKLTGAACSILCKEPNCVEINCQGEEDSRVIVVGDIHGQFHDLMFLFKHEGVPSENQIYVFNGNYVDKGAWGIEVFLVLLAWKVLMPHRVFLLRGNHESRYCTARYGFKKEVWAKYGDQGDDVYNKFLECFKELPLASVIANCVYTTHGGLFRSIHAAPSQRPKRNKTHRVDLGSLAELFNVKRSSIDCPYEGPNILLSDVLWSRPSNRYGLRDNTGQKLGLWWGPDCTEEFLKHHSLKLIIRSHDGPDSRAGKDNDLGNMLRGYSIDHDGESGKLCTLFSASDYPQFGKRRCNSKGAYAVLKSPDFASPSFHSFKGTERPMVDPYVDFGANNIDSSKLDSSQSVSWIKDFCVNMDQLEMPITFSHNHYVILLARDGNTESAYFCADMNAQASTSTLSASERFYPEGRRPEFDFGALGIYNAPCWSVELPDGSGGTQVVEVPRASLVEGLPLPPNIQEPHKAAYEYLFELVAGLKHMIVTRETENRARVSALRSRARKRKGQG 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00355 734 Pfam Calcineurin-like phosphoesterase 260 479 IPR004843 GO:0016787
Vimu4g00355 734 Gene3D - 209 570 IPR029052 -
Vimu4g00355 734 ProSitePatterns Serine/threonine specific protein phosphatases signature. 324 329 IPR006186 GO:0016787
Vimu4g00355 734 SUPERFAMILY Metallo-dependent phosphatases 222 556 IPR029052 -
Vimu4g00355 734 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 34 596 - -
Vimu4g00355 734 SMART pp2a_7 226 550 IPR006186 GO:0016787
Vimu4g00355 734 PRINTS Serine/threonine phosphatase family signature 506 522 IPR006186 GO:0016787
Vimu4g00355 734 PRINTS Serine/threonine phosphatase family signature 260 287 IPR006186 GO:0016787
Vimu4g00355 734 PRINTS Serine/threonine phosphatase family signature 323 347 IPR006186 GO:0016787
Vimu4g00355 734 PRINTS Serine/threonine phosphatase family signature 360 386 IPR006186 GO:0016787
Vimu4g00355 734 PRINTS Serine/threonine phosphatase family signature 290 317 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00355 Vimu-Chr4 2535456 2540144 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00355 190 471 Calmodulin-binding Proteins AT5G63870 51.712 3.32e-95 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00355 K04460 - gmx:100779241 968.378