Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00353 ATGGGGCACCACTCTTGCTGCAACAAGCAGAAGGTCAAAAGAGGACTATGGTCACCTGAAGAAGATGAAAAACTCATCAACTACATCACAACCTATGGCCACGGTTGCTGGAGTTCCGTCCCAAAACTTGCAGGCCTACAGAGGTGTGGAAAGAGCTGCAGATTGAGATGGATAAATTATCTAAGACCTGATTTGAAAAGGGGAAGCTTTTCTCCTCAAGAAGCAGCACTCATTATAGAACTTCATAGTATCCTTGGCAACAGGTGGGCTCAGATAGCGAAGCACCTACCTGGAAGAACAGATAATGAGGTGAAGAACTTTTGGAATTCAAGCATAAAGAAGAAGCTGCTTTCTCATGATGTTGTTCCTTCTTTAGCCACATTTTCTGATATTCACGGTCTTGCCAATGGTTCCATGGAAAGTTTCTTCCCTTTAACTGACAACACTATCCTAAACTCCCATCATCACTTAGACCAGCTATACCTTCCCATCATCCCAACCCCAATCCTACAAGCCTTTGATCATCTCAACAATGATATCAAGATTGACATAAACAATTATCATAATAACAATAATAATAATCCCAATTTCCTACATTTTCAGAATCCAATGCCAGAAACAGTGCCACCATCATCCAACAACATTATTCCATCTTTGTTTGAATTAGATACATGGTCGTCGTTGGGGTGTGTACCCATTCATCTTAATCCAAATCAACAAAGTCAAACAATGATCACCAAAAGCGACACCACCCCACACTTAATTCTTGAGAAATTCATCAATCCAAGTACATGGCAGCACCAGGTAGTGGAACCGACCATTGATCTTGTTCCAAAAGTGTGTGAGAGCATCGAGGATTATGTCTGCAACATCCCATTTTCTTCTTCTGCCAATTCACAACATCAACACGAGGATCCTGTCGCGTGTTACACACCAGGTATTTGTCCACAAGATCAAATTGCAGTACCCAATCAAGTGGAGTACATTGATGCCATCATCATGTCATCGTTGCCATCCTCAACAACATCATCTTCATCAGTATCACTCTATCAAGCAGACAAATAG 1065 0.415 MGHHSCCNKQKVKRGLWSPEEDEKLINYITTYGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLLSHDVVPSLATFSDIHGLANGSMESFFPLTDNTILNSHHHLDQLYLPIIPTPILQAFDHLNNDIKIDINNYHNNNNNNPNFLHFQNPMPETVPPSSNNIIPSLFELDTWSSLGCVPIHLNPNQQSQTMITKSDTTPHLILEKFINPSTWQHQVVEPTIDLVPKVCESIEDYVCNIPFSSSANSQHQHEDPVACYTPGICPQDQIAVPNQVEYIDAIIMSSLPSSTTSSSSVSLYQADK 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00353 354 FunFam MYB transcription factor 6 66 - -
Vimu4g00353 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vimu4g00353 354 Pfam Myb-like DNA-binding domain 67 109 IPR001005 -
Vimu4g00353 354 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vimu4g00353 354 PANTHER MYB DOMAIN PROTEIN 55 1 235 - -
Vimu4g00353 354 SMART sant 66 114 IPR001005 -
Vimu4g00353 354 SMART sant 13 63 IPR001005 -
Vimu4g00353 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vimu4g00353 354 FunFam Myb transcription factor 69 116 - -
Vimu4g00353 354 CDD SANT 17 61 IPR001005 -
Vimu4g00353 354 Gene3D - 11 67 - -
Vimu4g00353 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vimu4g00353 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vimu4g00353 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vimu4g00353 354 Gene3D - 69 116 - -
Vimu4g00353 354 CDD SANT 69 109 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00353 Vimu-Chr4 2519219 2520523 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00353 1 118 MYB Transcription Factor Family AT3G13890 96.610 2.78e-81 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vimu4g00353 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00353 K09422 - gmx:102662609 583.948