Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00351 ATGGGTGCTTCGGGAAAGTGGTTCAAGTCACTCATTCCTTTTCGGAAGACCTCAACTTCAACAACTGATCAAGGTGGTGAAAACAAGAGCAAGAAGAAATGGAAGCTATGGGGGGCTTCTTCAGAAGGGTCCACCGTGAAGAAAGTTGGTGAAGCTGCTGTTCCTGATTCTTCCTTTACTTATGCGGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAGTGGGCTGCCATCCGTATTCAGGCTGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTAAGGCTGCAAGCTATTTTTCGAGGCCGGTTAGTCAGAAAGCAAGCAGCCGTCACTCTGAGGTGTATGCAGGCTCTTGTTAGAGTTCAGGCTCATGTGAGGGCAAGGAATGTGAGGAATTCTCCTGAAGGGAAAGCGGTGCAGAAATTACTTGATGAGTATCGCAACCTAGCTGATCCTTTTAAGCAGATTGAGCAAGGATGGTGTGACATTCCTGGAACCGTGGATGAAGTTAAAGCAAAGCTACGAATGAGGCAAGAAGGAGCTATCAAGAGGGATAGGGCAATGGCATACTCTCTGTCCACACAGTCAAGACTGGTTGCCAGTCCAAATCCTAAAGCCAATAAGCTATTGACTCCTCTCAAGCAGCACAACCTAAGCAACAAGAGCTTAGGATGTAGCTTGTTAGAACGCTGGATGGAGGCCAAGCCTTGGGAGAGTCCAAACTACAGGAAGAGCGAAGACCTTGTTCCTGCTTTTCAATCAAGAAAGAATGGTGTGACATCCAGGATTTCAGCAGTTAAACCTCTAATGACTAGTCAATCCACTCCATCATCTTCGGCCATAAGCTCTGAATACATGTGTGATGATAGTCCTGTGTCAACTTCTTATACAGCTGGATCTCCATCTTTTCCGTCCACCAATACTGTTTTAATGGACGCAACAGAGGAAAGAGAGGTTCATCAACCAAGCTACATGAATTTGACAGAATCAACCAAGGCTAAACTGAAAACTTGCAGGAGTTCTTCCCAGAATTCAAAGAGTCTTGTGATGGAGGACTGTGTGTCTCACAGCACAACCACAGGTTTGATAAATGGAGATTTTAGAAGCAGTTCTAATTCTGACCCTTCAGTTAACATATGGAAGGATTCTTGTGCAACACCTCTGAGGGCAAGTTATCAAAAACGACAAATTGGGATATGA 1230 0.4577 MGASGKWFKSLIPFRKTSTSTTDQGGENKSKKKWKLWGASSEGSTVKKVGEAAVPDSSFTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQAHVRARNVRNSPEGKAVQKLLDEYRNLADPFKQIEQGWCDIPGTVDEVKAKLRMRQEGAIKRDRAMAYSLSTQSRLVASPNPKANKLLTPLKQHNLSNKSLGCSLLERWMEAKPWESPNYRKSEDLVPAFQSRKNGVTSRISAVKPLMTSQSTPSSSAISSEYMCDDSPVSTSYTAGSPSFPSTNTVLMDATEEREVHQPSYMNLTESTKAKLKTCRSSSQNSKSLVMEDCVSHSTTTGLINGDFRSSSNSDPSVNIWKDSCATPLRASYQKRQIGI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00351 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 118 IPR027417 -
Vimu4g00351 409 PANTHER IQ-DOMAIN 5-RELATED 1 373 - -
Vimu4g00351 409 SMART iq_5 98 119 IPR000048 GO:0005515
Vimu4g00351 409 SMART iq_5 75 97 IPR000048 GO:0005515
Vimu4g00351 409 ProSiteProfiles IQ motif profile. 76 104 IPR000048 GO:0005515
Vimu4g00351 409 Gene3D - 76 118 - -
Vimu4g00351 409 ProSiteProfiles IQ motif profile. 100 127 IPR000048 GO:0005515
Vimu4g00351 409 Pfam IQ calmodulin-binding motif 78 97 IPR000048 GO:0005515
Vimu4g00351 409 Pfam IQ calmodulin-binding motif 100 117 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00351 Vimu-Chr4 2508084 2510474 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00351 1 389 IQD Protein Family AT2G26180 44.578 9.17e-88 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00351 - - gmx:100788715 643.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00351 4 2508084 2510474 Vimu11g02980 11 49452139 49456668 PCT