Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00348 GGGTTTTCAATGGAGTATTTTCCTTCTCAACATGGCTTGCAATTCGAATCTGAACCTGGCGTCTACCATGGTGATGCGAATGATGAGCTCACAAAACCCTCCCCCAATCCTCGTGATTCGTCTTCAGGGTTAGTTACTTCTGTAGTGGGTGGTGGTACATGGGTTTTGTGGAGAAAGGGGTTTTGCAGCGTTAGGAAACTTTTCGTTGGGGGCATTTCATGGGAGACTTCTCAAGCTATAGTGCCAGAAGTTGTCACAACAATGGCCGAATTTACTGCTTCGCATGTGTTTTCTTTTTGTTTGTCAGAATCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACAGATTCGGTAATAATGACAAATAAACTTTCTGGAAGGCCACGTGGCTTTGGCTTTGTAACATTTGCCGATTCAGCTGTAGCAGATGAAGTTTTGGCCCAGGAACATACCATTGATGGCAGAGTGGTTGAAGTGAAGAGGACAGTCCCTAGGGAGGACATGGAAGGAATTGGAGTACTAAAAACAAAGAAGATATTTGTAGGGGGAATACCGCAACTTTTCACTGACGATGAGTTGAGGGGATACTTTTCACCTTATGGCGATGTTGTTGAGTGCCAAATCATGTTAGATCACAATACTGGGCGATCTAGAGGCTTTGGATTTGTAACTTTTGACAACGAAGATTCAGTTGAAAAGGTGTTTTCAGCGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAAATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATCACATCAGTACCTCACGAAAGTCATATGGTGGTTTTAGCAATGGAATGGACGGATATGGTGGGAATAGCTCTAGAAATCGTAATCATGGAAAAAGAGGTGGACAGTATACAGATCCTGGAATGAACGGAGCATATGGCTACTTTGAGGGAAGCTTTGGCGGAAGTGCTGCCACTGTTTATGGTGGTTATTGTGGATATGGTTATGGCTTTGGATATGGTGGACCAATGTATTGCTATGGCGGCTATGGACTGAATTCTTATGGTAATCCTGGGGTTTATGGTGGCGGCACTATTTCCCATGGAGATGGTAATGCATATGGAAGAAACGGTAGTTTCAACCGCAGCAGTGGCTATGATGGTGGGAAAGGGGCTGAGAAGGACGATGGTCCTCCAACTGGAAGGTACCATCCTTACTGGAAATGA 1209 0.4384 GFSMEYFPSQHGLQFESEPGVYHGDANDELTKPSPNPRDSSSGLVTSVVGGGTWVLWRKGFCSVRKLFVGGISWETSQAIVPEVVTTMAEFTASHVFSFCLSESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSAVADEVLAQEHTIDGRVVEVKRTVPREDMEGIGVLKTKKIFVGGIPQLFTDDELRGYFSPYGDVVECQIMLDHNTGRSRGFGFVTFDNEDSVEKVFSAGKIHEIGGKQVEIKRAEPKRSGVDHISTSRKSYGGFSNGMDGYGGNSSRNRNHGKRGGQYTDPGMNGAYGYFEGSFGGSAATVYGGYCGYGYGFGYGGPMYCYGGYGLNSYGNPGVYGGGTISHGDGNAYGRNGSFNRSSGYDGGKGAEKDDGPPTGRYHPYWK 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00348 402 MobiDBLite consensus disorder prediction 374 402 - -
Vimu4g00348 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 158 IPR000504 GO:0003723
Vimu4g00348 402 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 248 IPR000504 GO:0003723
Vimu4g00348 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 256 IPR000504 GO:0003723
Vimu4g00348 402 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 165 IPR000504 GO:0003723
Vimu4g00348 402 MobiDBLite consensus disorder prediction 255 297 - -
Vimu4g00348 402 SMART rrm1_1 179 252 IPR000504 GO:0003723
Vimu4g00348 402 SMART rrm1_1 66 161 IPR000504 GO:0003723
Vimu4g00348 402 MobiDBLite consensus disorder prediction 24 44 - -
Vimu4g00348 402 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 64 401 - -
Vimu4g00348 402 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 168 305 - -
Vimu4g00348 402 SUPERFAMILY RNA-binding domain, RBD 63 169 IPR035979 GO:0003676
Vimu4g00348 402 Gene3D - 63 170 IPR012677 -
Vimu4g00348 402 MobiDBLite consensus disorder prediction 265 292 - -
Vimu4g00348 402 Gene3D - 173 306 IPR012677 -
Vimu4g00348 402 SUPERFAMILY RNA-binding domain, RBD 177 284 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00348 Vimu-Chr4 2490687 2493564 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00348 109 275 Eukaryotic Initiation Factors Gene Family AT1G71770 27.807 4.63e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00348 K12741 - gmx:100818080 543.888