Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00341 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCTTCTTCAGGCAACAGAACCGAAATTGGTTCTGATTACTCGCAGCAATACTTTGCTAGCCCACCAACTCAAACGCAGGCTCCAACAAAGAAAAAGAGAAACCTTCCAGGCAACCCAGACCCGGAGGCTGAAGTCGTGGCGTTGTCTCCAAAGACTCTCTTGGCCACAAACAGGTTCGTCTGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTCCAGCTTCACAGAAGAGGGCACAACTTACCATGGAAGCTGAAGCAGAGAACGAGCAAGGAGATAAGGAAGAAGGTTTATGTGTGCCCAGAAGCAAGTTGCGTCCACCATGACCCTTCAAGGGCCCTGGGGGACCTAACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCAAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGTAA 555 0.4865 MSNLTSASGEASASSGNRTEIGSDYSQQYFASPPTQTQAPTKKKRNLPGNPDPEAEVVALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSKEIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00341 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Vimu4g00341 184 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Vimu4g00341 184 Gene3D Classic Zinc Finger 68 169 - -
Vimu4g00341 184 SMART c2h2final6 71 93 IPR013087 -
Vimu4g00341 184 SMART c2h2final6 112 142 IPR013087 -
Vimu4g00341 184 SMART c2h2final6 147 167 IPR013087 -
Vimu4g00341 184 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Vimu4g00341 184 FunFam protein indeterminate-domain 12-like 50 118 - -
Vimu4g00341 184 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 184 IPR031140 -
Vimu4g00341 184 MobiDBLite consensus disorder prediction 1 55 - -
Vimu4g00341 184 MobiDBLite consensus disorder prediction 1 44 - -
Vimu4g00341 184 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00341 Vimu-Chr4 2455244 2455956 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00341 1 184 IDZ Gene Family AT3G13810 80.203 3.95e-107 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu4g00341 zf-C2H2_jaz 4.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00341 K25870 - cave:132187040 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00341 4 2455244 2455956 Vimu11g02970 11 49366315 49369466 PCT