Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00337 ATGGAAGGTGGCACGAGTTCCTCAAGGAGCACCATACAGGCTTGTGCTGCTTGTAAGTACCAACGCAGGAAGTGCGGACCCAACTGCATTCTCGCACCTTTCTTTCCTCATTATCGCCAAAAACAGTTCCTTAATGCTCACAAGCTTTTCGGAGTTGGCAAAATCACCAGCATGATCAAGCCTCTTGACCCTGTTAACAGAAACTCAGCCATCAACACCATTATCTTTGAGTCTGATATGAGAGCCAAAGACCCTGTTGGGGGCTGCTTTAGAACCATTCTTTACTTGCAATCTCTCATTGCTTCTGCAGAATCTGAACTCCAATTTCTCCTTCAACACCTTGCCTTCTTCAGAGCACAAGCTCTTCATTCCATCGCCACACCACAACCACCACCACCACCTTCTTCCTCCCACCACCCTTATCATCAAGGAATGTCACTTCAAGAATCAAAAGATCCGTCACAACTTCACCCACAAGAACTTGGAAAGGATCCCTCACAACTTCAACAACAAGAACATCCAAAAGATCCGTGCTTTAATTACAATGCATTGCAAGAAGATATGAACGTGTCCGACATTGACAACTTATGCGTTCTTTCTTTGTCTCAAGAATCCAATGATTTGGATGATGCAATTAGTCTAGAGGGAATTGGAGTCGTTCTGAACCGGAGCCGATTCAAATCCGAAGGGGAATGGTGGGTGAGGTCATGGCCTCGGTCAAGGAGAAACACTGACCGATATTACGAGAAGCTGCTGCTGAATTGGGAGGAAGGGGAAGTGGTCCATGACACCAGGGCGGCGTGGCGGCGTTAG 813 0.4699 MEGGTSSSRSTIQACAACKYQRRKCGPNCILAPFFPHYRQKQFLNAHKLFGVGKITSMIKPLDPVNRNSAINTIIFESDMRAKDPVGGCFRTILYLQSLIASAESELQFLLQHLAFFRAQALHSIATPQPPPPPSSSHHPYHQGMSLQESKDPSQLHPQELGKDPSQLQQQEHPKDPCFNYNALQEDMNVSDIDNLCVLSLSQESNDLDDAISLEGIGVVLNRSRFKSEGEWWVRSWPRSRRNTDRYYEKLLLNWEEGEVVHDTRAAWRR 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00337 270 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Vimu4g00337 270 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 12 154 - -
Vimu4g00337 270 Pfam Lateral organ boundaries (LOB) domain 14 109 IPR004883 -
Vimu4g00337 270 MobiDBLite consensus disorder prediction 125 177 - -
Vimu4g00337 270 MobiDBLite consensus disorder prediction 139 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00337 Vimu-Chr4 2429790 2431048 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00337 13 121 AS2 family AT3G13850 59.633 3.38e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vimu4g00337 LOB 7.6e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00337 4 2429790 2431048 Vimu11g02968 11 49349128 49350519 PCT