Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00336 ATGGCAACCAACCAACTCAAAGAACCACCCAAAAGGCTCCAATACCCACTCGACTCTTCCTCCTACAAGCTCCTCAACGAGATCGGCGCCGGCGTCAGCGCCGTCGTCTACAAAGCCATCTGCATCCCCATGAACTCCGCCGCTGTCGCAATCAAATCCATAGACCTCGACCGTTCCCGCCCCGACTTGGACGACGTTCGTCGCGAGGCCAAAACCCTGTCCCTCCTTTCACACCCTAACATCCTCAAAGCACACTGCTCCTTCACCGTCGACCGCCGCCTCTGGGTCGTCATGCCCTTCATGGCCGCAGGATCTCTCCAATCCATCATCTCTCACTCCCACCCCAACGGCTTAACCGAGCCCTGCATCGCGGTGGTTCTCAGAGACACCCTCAATGCCCTCTCCTACCTCCACGGCCAGGGCCACCTCCACCGTGACATAAAAGCCGGGAATATCCTCGTTGACACAAACGGACAGGTAAAGCTCGCGGATTTCGGCGTGTCGGCTTCCATCTACGAGTCCTCCACGTGTTCCTCTCTCAAGTTCACCGATGTTGCAGGCACGCCGTATTGGATGGCTCCGGAGGTGATTCACTCGCATACAGGGTACAGTTTCAAGGCTGATATATGGTCCTTTGGGATAACCGCTTTGGAGCTCGCGCATGGAAGGCCTCCTCTCTCCCATCTTCCACCTTCAAAGTCCATGATGCTCAAGATCACCAAGCGGTTTCGGTTCTCCGATTTGGATAAATATAGAAAGGGGAACGGGAATAAGTTCTCCAAGGCGTTCAAGGACATGGTGGCTTCTTGTCTGGACCAAGATCCTTCCAAAAGACCCACTGCTGATAAGTTGCTGAAACACCCATTTTTTAAAAACTGCAAAGGAACTGATTTTCTAGTCAAGAACGTGCTTTTAGGGTTGCCCAGTGTGGAGAAAAGGTACAAGGAGAGCAAGGTTAACGAACATGCAGATGGGGGAGGCCACAATGATGACGACGACGACGATGATGAAGACCCCGCCATGCAGGTGAAGGAGAGAAGGATAAGTGGGTGGAACTTCAACCAAGACGGGTTGGAGCTTGATCCTGTGTTTCCAAACGATGATGCGGGGGCCAAAAAGTCTGAACTTGGAGGGGAAAGTGTTATGAGAAAAATGGAGGAGCTTGTTAATGTTGGTGGAAGTGAAGCAGGAAATGGTGGTGGTGGTGTGAAGAAGAGGGAGAAGATGTTGGCGACTCTGAATGTTCTGAAAGGGAGCTTGGAACAAGAGCTGTTGGAAGTGAAATTTCTTCTGAATATGATAAGAGGAGAGGAGGAGAATGATCGTGATCAAGTGGTTGCTGCTGCTTCTGCTGATCATAATGAGGAGAAGGAGATTTCTATGCTCAGGGCTGCACTGGAAAATGAGAGGAAGAAGAACTTACAGCTGGAGTTGCAGCTCCACAACTGCAAGATTCAACTTTCTTCTCTCAATATTTCCAACTAA 1485 0.5104 MATNQLKEPPKRLQYPLDSSSYKLLNEIGAGVSAVVYKAICIPMNSAAVAIKSIDLDRSRPDLDDVRREAKTLSLLSHPNILKAHCSFTVDRRLWVVMPFMAAGSLQSIISHSHPNGLTEPCIAVVLRDTLNALSYLHGQGHLHRDIKAGNILVDTNGQVKLADFGVSASIYESSTCSSLKFTDVAGTPYWMAPEVIHSHTGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLKITKRFRFSDLDKYRKGNGNKFSKAFKDMVASCLDQDPSKRPTADKLLKHPFFKNCKGTDFLVKNVLLGLPSVEKRYKESKVNEHADGGGHNDDDDDDDEDPAMQVKERRISGWNFNQDGLELDPVFPNDDAGAKKSELGGESVMRKMEELVNVGGSEAGNGGGGVKKREKMLATLNVLKGSLEQELLEVKFLLNMIRGEEENDRDQVVAAASADHNEEKEISMLRAALENERKKNLQLELQLHNCKIQLSSLNISN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00336 494 Gene3D Transferase(Phosphotransferase) domain 1 104 337 - -
Vimu4g00336 494 SUPERFAMILY Protein kinase-like (PK-like) 13 295 IPR011009 -
Vimu4g00336 494 Pfam Protein kinase domain 22 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00336 494 ProSiteProfiles Protein kinase domain profile. 22 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00336 494 SMART serkin_6 22 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00336 494 Gene3D Phosphorylase Kinase; domain 1 11 100 - -
Vimu4g00336 494 MobiDBLite consensus disorder prediction 318 338 - -
Vimu4g00336 494 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 14 470 IPR047173 GO:0043539
Vimu4g00336 494 ProSitePatterns Protein kinases ATP-binding region signature. 28 52 IPR017441 GO:0005524
Vimu4g00336 494 FunFam Serine/threonine-protein kinase BLUS1 104 337 - -
Vimu4g00336 494 Coils Coil 459 486 - -
Vimu4g00336 494 FunFam Serine/threonine-protein kinase BLUS1 11 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00336 Vimu-Chr4 2427340 2428824 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00336 12 475 MAP Kinase Kinase Kinase Kinase AT4G14480 55.828 2.74e-179 510
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vimu4g00336 Pkinase 5.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00336 K08835 - gmx:100820227 739.954