Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00328 ATGTTCAAAGCAGGAACTGCCAGTGTTAGGTCATTGACTTATGCAAGCATGCCAGGTTCTAGATCAATGTCCTTCAGTTCTGGAACAATAATCTATGCAGGATCAGCTAAAATATTTTCTTTGAACGAAATCGAGAAAGCAACAAATAACTTCAATTCTTCAAGCATATTAGGAGAAGGTGGCTTCGGTCTTGTTTATAAGGGTGACTTAAATGATGGCAGAGAGGTGGCTGTGAAGATTCTCAAAAGGGATGACCAGCATGGTGACCATGATTTCTTTGCAGAGTCAGAGATGCTTAGCTGCTTGCACCATAGGAATTTAGTTAAATTGATAGGTATATGCACAGAGAAAGAGACTCGCTGCTTAGTTTATGAGCTTGTCCCTAATGGCAGCGTGGAATCCCACTTACATGGTGTGGACAAGGAAACCGAACCACTTGATTGGAATGCCCGGATGAAGATTGCACTTGGTGCAGCTAGAGGATTAGCCTATCTGCATGAAGATTGTAATCCATGTGTCATACACAGAGACTTCAAATCCAGCAACATCTTATTGGAACACGATTTTGTACCCAAAGTTTCAGATTTTGGCTTGGCTAGAACAACATTGAACGAGGGAAACAAGCCCATTTCAACTCATGTTATTGGTACATTTGGCTACGTAGCTCCTGAATATGCAATGACAGGACATCTTCTTGTCAAAAGTGATGTTTACAGCTATGGAGTTGTACTCCTTGAGCTGCTAAGTGGAAGAAAGCCTGTGGATTTGTCACAGCCACCAGGCCAAGAAAACCTTGTTGCTTGGGCTCGTCCACTTCTTAAAAGTAAGGAGGGTTTGCAGAAGATCATAGACCCATTTATGAAGGACAGTGTTTCCATTGATACCATTGTAAAGGTTGCAGCAATTGCATCCATGTGCGTGCAATCAGAAGTCACTCAGCGTCCTTTTATGGGTGAAGTTGTTCAGGCCTTGACATTGAGTGCAACAGAACCTTGCTTCAGCCTAGTTATCAACCTGGTTGAGAACCAAGGTAGCACTACTGTCATCATAAGTAATGCTCACAAGGGGCAAGAATTTGAGTCATTGGGGTTGCTTGTGTATAGGGGACAGAAATTTCAACCAAATTCCCATTAA 1134 0.4242 MFKAGTASVRSLTYASMPGSRSMSFSSGTIIYAGSAKIFSLNEIEKATNNFNSSSILGEGGFGLVYKGDLNDGREVAVKILKRDDQHGDHDFFAESEMLSCLHHRNLVKLIGICTEKETRCLVYELVPNGSVESHLHGVDKETEPLDWNARMKIALGAARGLAYLHEDCNPCVIHRDFKSSNILLEHDFVPKVSDFGLARTTLNEGNKPISTHVIGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDLSQPPGQENLVAWARPLLKSKEGLQKIIDPFMKDSVSIDTIVKVAAIASMCVQSEVTQRPFMGEVVQALTLSATEPCFSLVINLVENQGSTTVIISNAHKGQEFESLGLLVYRGQKFQPNSH 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00328 377 Pfam Protein tyrosine and serine/threonine kinase 54 324 IPR001245 GO:0004672|GO:0006468
Vimu4g00328 377 FunFam receptor-like serine/threonine-protein kinase ALE2 24 126 - -
Vimu4g00328 377 CDD STKc_IRAK 57 325 - -
Vimu4g00328 377 ProSitePatterns Protein kinases ATP-binding region signature. 57 79 IPR017441 GO:0005524
Vimu4g00328 377 ProSiteProfiles Protein kinase domain profile. 51 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00328 377 SUPERFAMILY Protein kinase-like (PK-like) 31 324 IPR011009 -
Vimu4g00328 377 PANTHER OS01G0750732 PROTEIN 15 329 - -
Vimu4g00328 377 Gene3D Phosphorylase Kinase; domain 1 24 126 - -
Vimu4g00328 377 Gene3D Transferase(Phosphotransferase) domain 1 127 333 - -
Vimu4g00328 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vimu4g00328 377 FunFam Receptor-like serine/threonine-protein kinase ALE2 127 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00328 Vimu-Chr4 2397060 2398527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00328 35 330 Receptor kinase-like Gene Family AT5G56890 74.074 1.02e-154 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vimu4g00328 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00328 - - gmx:100775318 574.318