Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00315 TTCATATTGGTGCTTAAATCAATGGAGGAAATGTCTAAGTTCCTCATCCATGGAACAATTGAAGCTACCATTTTCAATGCCACACCTTACTCACCTTTCTTTCCCTTCAATTGTGTACATAGAAAAGGAAAGCCTGCATATGTATCCATCAGGATAGGAAAACAGAAGTTGGCGAAAACGACACAAGAACGTGAACGTGTGTGGAACCAAACCTTTCAGATTTTGTGTGCTCATCCAGAAGATTCAACTATCACCATTACACTGAAGACATCATGCTTCGTTTTGGGAAAATTCCACATGCAGGCCAAGCGGTTGAAGGAAGAGAGTTTGATCAATGGATTGTTCCCTCTCCTCATGGAAAATGGAAAACCGAATCCACAACTAAAGTTAAGATTTATGTTGTGGTTCAAGCCAGCAGAAATGGAACCAAGTTGGAGAAAGATACTAAACAATGGGGAGTTTCAAGGGCTTAGGGATGCTACTTTCCCACAAAGGTCCAACTGCGAGGTTAAACTCTATCATGATGCTCACCATTCATCTACCTTCCACCCTCCTTTTGACCTTTGTGGCGCTCCATTAAAGCTATGGGAAGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTGATTTATATTGCAGGCTGGTCTTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATTCCTCATGCTAGGGAGATAAATCTGGGTGAGTTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGACGAAACATCTTTGCCTTTGATTAAGAACAAAGGTGTGATGAACACTCATGACGAGGAAGCTTTTGCTTACTTCAAACACACTAAAGTAATATGCAGAAAGTGTCCCAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACACCAGAACACCCTATTCTGTTCATGCCAGAGAAATTATGAGCTTTTTGGGTGGTTTAGATTTGTGTGGTGGTCGCTATGACACAGAAAAACACTCATTGTTTCAGACACTTGCTGAGGAATCCGATTACCATGACTTCTACCAGACAAACATTGCAAAAGCTAGCCTAAATAAAGGAGGACCGAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCATGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGCGATCCTTCTCTTCTAGTTCCTGCCAACACTCTAGAAAATCTCATTCCCACATACTCGAGCACTCCAACAGAAAGGAATTGGAAAGTCCAAGTATATAGGTCAATTGACCATGTATCTGCTAGCCAGTTGTTTAGAAGGCTAACTGTGGAGAGAAGCATCCATGAAGCTTATGTTGAAGCTATTAGGCGTGCTGATAGGTTTGTATACATTGAAAACCAGTATTTTGTTGGAGGGTGTCACTTGTGGCAAGAAGATAGGCATAGTGGATGCAGCAATCTGATTCCTGTTGAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCGGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTTCACTGGACCAGAGAAACAATGACAATGATGTATTGGTTGATTGGAGAAGCAATAACAGAAAGTGGGGAGCCAGGGCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAACAGGGAAAAGAAGGAAAAGGAGGAGTTTCTTCCTCCATTTTCTCCACATCCTGCAACACAATACTGGAATGCCCAAAAGAACAGAAGGTTCCCGATTTATGTTCATTCAAAGGTGATGATAGTGGACGACATATACATATTAATAGGATCAGCCAATGTGAACCAACGATCCATGGATGGACAAAGGGACACTGAGATTGCCATTGGGGCATACCAGCTTCAAGATGGAGTTGATCACCACGTAAACCGTGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAGCACACAGGAAGTGCTGAGGAACTGTTCTTAGAGCCAGAAAGTTTGGCATGTGTTCAGAGAATGAGGTCAATAGGGGATCATATGTGGGAAATGTACAGCAGTGAAGAAATTGTAGACATGGAAGGTGTGCACCTTGTAAGGTACCCTGTGAAAATAACTCAAGAAGGGTATGTGGAGGACCCAGATGATGGTGGTGATCATTTTCCTGATACAAAATCTCCTGTGAGGGGGAAGAGATCAAAATTCTTAAACCCTGCCTTTACCACTTAA 2298 0.4256 FILVLKSMEEMSKFLIHGTIEATIFNATPYSPFFPFNCVHRKGKPAYVSIRIGKQKLAKTTQERERVWNQTFQILCAHPEDSTITITLKTSCFVLGKFHMQAKRLKEESLINGLFPLLMENGKPNPQLKLRFMLWFKPAEMEPSWRKILNNGEFQGLRDATFPQRSNCEVKLYHDAHHSSTFHPPFDLCGAPLKLWEDVYKAIEGAKYLIYIAGWSFNPKMVLVRDPQTEIPHAREINLGELLKKKAEEGVAVRVMIWDDETSLPLIKNKGVMNTHDEEAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDTRTPYSVHAREIMSFLGGLDLCGGRYDTEKHSLFQTLAEESDYHDFYQTNIAKASLNKGGPREPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSLLVPANTLENLIPTYSSTPTERNWKVQVYRSIDHVSASQLFRRLTVERSIHEAYVEAIRRADRFVYIENQYFVGGCHLWQEDRHSGCSNLIPVEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYWLIGEAITESGEPGHPRDYLNFFCLANREKKEKEEFLPPFSPHPATQYWNAQKNRRFPIYVHSKVMIVDDIYILIGSANVNQRSMDGQRDTEIAIGAYQLQDGVDHHVNRGDIHAYRMSLWYEHTGSAEELFLEPESLACVQRMRSIGDHMWEMYSSEEIVDMEGVHLVRYPVKITQEGYVEDPDDGGDHFPDTKSPVRGKRSKFLNPAFTT 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00315 765 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 610 637 IPR001736 GO:0003824
Vimu4g00315 765 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 303 340 IPR001736 GO:0003824
Vimu4g00315 765 Gene3D Endonuclease Chain A 452 663 - -
Vimu4g00315 765 Pfam Phospholipase D C terminal 682 754 IPR024632 -
Vimu4g00315 765 SUPERFAMILY Phospholipase D/nuclease 430 694 - -
Vimu4g00315 765 Gene3D Endonuclease Chain A 190 432 - -
Vimu4g00315 765 MobiDBLite consensus disorder prediction 733 753 - -
Vimu4g00315 765 Pfam Phospholipase D Active site motif 304 340 IPR001736 GO:0003824
Vimu4g00315 765 PANTHER PHOSPHOLIPASE D 15 749 IPR015679 -
Vimu4g00315 765 PIRSF PLD_plant 5 765 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vimu4g00315 765 SMART pld_4 303 340 IPR001736 GO:0003824
Vimu4g00315 765 SMART pld_4 610 637 IPR001736 GO:0003824
Vimu4g00315 765 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 46 139 IPR035892 -
Vimu4g00315 765 MobiDBLite consensus disorder prediction 733 755 - -
Vimu4g00315 765 Pfam C2 domain 46 117 IPR000008 -
Vimu4g00315 765 SUPERFAMILY Phospholipase D/nuclease 155 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00315 Vimu-Chr4 2318019 2320738 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00315 33 765 Phospholipase D Gene Family (Wang group) AT1G55180 61.733 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00315 K01115 - gmx:100807431 1405.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00315 4 2318019 2320738 Vimu4g00315 4 2318019 2320738 ECH
Vimu4g00315 4 2318019 2320738 Vimu11g02949 11 49231935 49235382 PCT