Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00313 ATGAAAACCTCGAACCATTCCGTCCATCAGCCTGCGTGTGGAGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTGAGGGAACATCTTACTGGTCCTTTGCCAAAAGGAGCTTGTTCAAAGACTTTCTCTCAACGGGGCTGTCAACTTTGCTTGGTACTATTTGATGGTCCCGGGTCTCTCATTGCTCACAGAGAAACATGTTGCTTATCTGCCCCTACTCGTCTTGGAACTAAAGAACTGACCTATATAAATTCCCAATTTGACTGTCAAGATTCTTCTGATGAAAACCATACTGGCAGGGGCCCTGGAGGAACAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCAAGAGTATGTTTGGTTGATGAAGATGAGAACTTAATCTTTCATACGTATGTAAAACCTCAATTGCCTGTTACTAATTACAGATATGATATAACTGGGTTGACAGAAGAACATCTCAGAAATGCCATGCCCCTTAACGAAGTTAAAGAAAACGTATGCAAAATACTATACAATGGAGAAAACCTTGGCAAAATTCGACTAAATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTATATTGCTTGAATATGCATTATCCTGATCATATGCTAAGAGACACTGCAAAGTACCGTCCGTTGATGAAGACAAACTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGTTATGATATCCAATCCGGCACTCATGACCCGTATGAAGATTGTGTTTCTGTGATGAGACTATACAAGAGAATACGAGCTCAAATGCATCCAGAGGAAGAAGACCATGGAACATCGACTCCGAGTAACAGGATTGTTGGTGTGCCTGATTGCTGGAGATCCAAGGAACTTGACAACCTCACTCCAGATCAACTCTATGCCATGTCAAGATCGGATTACAAGTGTTGGTGCTTGGATTTGAGGCCAAAATTGCCAACCTGA 1005 0.4289 MKTSNHSVHQPACGVCQKHCKSFESLREHLTGPLPKGACSKTFSQRGCQLCLVLFDGPGSLIAHRETCCLSAPTRLGTKELTYINSQFDCQDSSDENHTGRGPGGTVAIDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQLPVTNYRYDITGLTEEHLRNAMPLNEVKENVCKILYNGENLGKIRLNGGKARLLVGHDLAHDLYCLNMHYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCVSVMRLYKRIRAQMHPEEEDHGTSTPSNRIVGVPDCWRSKELDNLTPDQLYAMSRSDYKCWCLDLRPKLPT 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00313 334 CDD REX4_like 107 271 IPR037431 GO:0006364|GO:0008408
Vimu4g00313 334 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 3 282 IPR047021 GO:0004527
Vimu4g00313 334 Pfam Exonuclease 107 270 IPR013520 -
Vimu4g00313 334 Gene3D - 105 287 IPR036397 GO:0003676
Vimu4g00313 334 SUPERFAMILY Ribonuclease H-like 107 273 IPR012337 -
Vimu4g00313 334 SMART exoiiiendus 105 279 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00313 Vimu-Chr4 2306013 2309399 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00313 1 327 C2H2 Transcription Factor Family AT3G27970 52.599 1.68e-121 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00313 K18327 - gmx:100788682 593.964