Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00312 TTGCTGGCCCTGATGAGTCGAGAACAGCAGAAGCGAGGGAAGCAAGAAATATGTTCTGATGGAGCTGAAAAGGTTATTGTTGCCGTTAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTGACTCATGTTGTGCAACCTGGCGATTGCATTACATTGCTAGTAGTTGTACCTTCACAGAGTTCGGGCAGAAGATTGTGGGGTTTTCCAAGATTTGCTGGTGATTGTGCCAGTGGTCATAAGAAATCTTCTTCAGGATCATCAAGTTCGGAACAGAAGTGTGATATCACTGACTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCTAACAAGATAAATGTGAAGATTAAAATTATTTCTGGATCACCATGTGGAGCAGTGGCTGCGGAAGCCAAGAAAGCCCAAGCCAATTGGGTCGTTTTAGACAAACAGCTCAAACATGAAGAAAAACAATGTATGGAAGAGCTGCAATGCAACATTGTGGTTATGAAGCGTTCACAACCTAAGGTACTCCGCTTGAATTTGGTTGGAACAAAAACGAAGGATCTTGAAGAATTATGTTCACTACCTTCTGAACAAGATCAGATGCTTGGAAAACAAACAAAGAACAAGAGTGATTCTTTAAATTCCTTAAAAGGTCCTGTTGTCACTCCATCCAGCAGCCCTGAGCTAGGGACACCATTCACCGCAACTGAAGCTGGTACTTCCTCGGTTTCAAGCTCTGATCAAGGAACTTCACCATTTTTCATCTCTGAGATAAACAGTGAGTCCAAAAAAGAGGAAACTATAAAAGAAAATCCAGAACTTGATGATTCTATATCAGACACAGACAGTGAAAGCTTATCCACTTCTTCAGCAAGCTTGAGATTCCAGCCATGGATCACCGATTTACTTCTGCATCAACGATCTTCTCAACCTAAGGAAGAAAGAACAGAGAGATCTCATAGTAGGAATCAATTGTCTACTACTAGAGCTTTGCTAGAAAAGTTCTCGAGACTTGATAGAGAAGCTGAAATTGAAATCTCAACCTATAAGACTGACTTGGATTTCAGTGGGAATGTACGAGAAGCAATAGCGTTATCTAGAAATACTCCGCTTGGTCCACCTCCCTTGTGTTCAATCTGTCAACACAAGGCTCCTGTTTTTGGAAAACCTCCAAGATGGTTTACCTATGCTGAATTGGAGCTTGCCACTGGTGGATTTTCACAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGTGTTCTACCAGATGGACAAGTTGTTGCTGTGAAGCAACATAAATTGGCCAGTTCTCAGGGTGACCTTGAATTCTGCTCGGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGTTGATTGGTTTCTGTATAGAGGATAAGAGAAGGCTATTGGTTTATGAGTACATATGCAATGGATCATTGGATTCTCATTTATATGGGAGACAACGAAAACCATTAGAATGGTCTGCCCGGCAAAAAGTTGCTGTTGGAGCTGCCCGAGGGTTGCGATATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCACCGTGACATGCGACCCAACAACATTCTTATCACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCGAGGTGGCAGCCTGATGGTGACACAGGAGTGGAAACTAGAGTAATCGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATTACTGAAAAGGCTGATGTTTATTCATTTGGTGTTGTATTAGTAGAGCTTGTTACAGGGCGAAAGGCTGTGGATCTGAATAGGCCAAAGGGACAGCAGTGTCTTACTGAGTGGGCACGACCGCTGTTAGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGTTGGGAAGCCACTATTCGGAACATGAGGTCTATTGCATGCTGCATGCTGCCTCATTGTGCATAAGGAGAGATCCTTATTCTAGACCTCGCATGTCACAGGTAAGGAAAATTGAACAAATATTTTGTTTTTTGAATTCCTCGTGTGCTGCTGAACTGAGAGTTAACTTTTATGAATTCACTCTAGATGGTTCTTTTATTGTTTTGCGAATACTTGATGGTGACACTGTTATGGACCCAAATTATGTTTCAACTCCCAGTTATGATGTGGGAAACCGGAGTGGTTGA 2205 0.4263 MLALMSREQQKRGKQEICSDGAEKVIVAVKASKEIPKTALVWSLTHVVQPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGHKKSSSGSSSSEQKCDITDSCSQMILQLHDVYDPNKINVKIKIISGSPCGAVAAEAKKAQANWVVLDKQLKHEEKQCMEELQCNIVVMKRSQPKVLRLNLVGTKTKDLEELCSLPSEQDQMLGKQTKNKSDSLNSLKGPVVTPSSSPELGTPFTATEAGTSSVSSSDQGTSPFFISEINSESKKEETIKENPELDDSISDTDSESLSTSSASLRFQPWITDLLLHQRSSQPKEERTERSHSRNQLSTTRALLEKFSRLDREAEIEISTYKTDLDFSGNVREAIALSRNTPLGPPPLCSICQHKAPVFGKPPRWFTYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRKPLEWSARQKVAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEHEVYCMLHAASLCIRRDPYSRPRMSQVRKIEQIFCFLNSSCAAELRVNFYEFTLDGSFIVLRILDGDTVMDPNYVSTPSYDVGNRSG 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00312 734 FunFam Dual-specific kinase DSK1-like 16 171 - -
Vimu4g00312 734 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 380 483 - -
Vimu4g00312 734 MobiDBLite consensus disorder prediction 201 292 - -
Vimu4g00312 734 SUPERFAMILY Protein kinase-like (PK-like) 392 678 IPR011009 -
Vimu4g00312 734 MobiDBLite consensus disorder prediction 201 260 - -
Vimu4g00312 734 MobiDBLite consensus disorder prediction 261 278 - -
Vimu4g00312 734 ProSitePatterns Tyrosine protein kinases specific active-site signature. 529 541 IPR008266 GO:0004672|GO:0006468
Vimu4g00312 734 CDD STKc_IRAK 414 680 - -
Vimu4g00312 734 PANTHER OS01G0750732 PROTEIN 160 685 - -
Vimu4g00312 734 Gene3D Transferase(Phosphotransferase) domain 1 484 682 - -
Vimu4g00312 734 Gene3D Phosphorylase Kinase; domain 1 380 483 - -
Vimu4g00312 734 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 484 687 - -
Vimu4g00312 734 Pfam Protein tyrosine and serine/threonine kinase 412 675 IPR001245 GO:0004672|GO:0006468
Vimu4g00312 734 ProSiteProfiles Protein kinase domain profile. 408 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00312 Vimu-Chr4 2299973 2303758 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00312 367 686 Trihelix Transcription Factor Family AT1G68690 50.769 2.28e-101 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vimu4g00312 PK_Tyr_Ser-Thr 8.9e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00312 - - gmx:100789216 1252.65