Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00301 ATGGCGGAAAACGACATAGATAGAAGTGTTGAAGATATGACTCTTTTGTTGATGGTGGACGTCTATACATTTGGGCTTTGGCCATTTTGGGTGTATGCATTTGGGCTTTTGCAGGTGCGTGTCTATGCATTTGGGTTGCAGCCCATTAACAAACGAGCGAAGGTTCTTGTGTTTCAATTTAGATCTCGTGTGGTCGTATCAGTACCAGGACAATTGATTTGGGAGATCGTGAAGAAGAACAACTCTTTCTTGGTGAAAGAGTTCGGAAGGGGCACTCAGAGCGTGCAGTTCAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCTGGTTTGGCGAACAAGAAAACCGTCACTATTCAGCCTGCTGGTAAAGACCAATCTGTAATACTGGCCACAACTAAAACAAGGAAACAAAATAAGCCTGCTTCTTTGCTTCACAAGTCTGTCATGAAAAAGGAGTTCCGAAGAATGGCGAAGGCAGTGCAAAATCAGGTAGCGGATAACTACTACAGACCTGATCTGAAAAAGGCAGCTTTGGCAAGGTTGAGCGCTGTCAATAGGAGTCTGAAAGTTGCAAAGTCTGGAGTTAAGAAGAGAAACAGACAGGCTGTGAAGGTTGTTGGCAGGAAGTGA 645 0.445 MAENDIDRSVEDMTLLLMVDVYTFGLWPFWVYAFGLLQVRVYAFGLQPINKRAKVLVFQFRSRVVVSVPGQLIWEIVKKNNSFLVKEFGRGTQSVQFSREPNNLYNLNTFKYSGLANKKTVTIQPAGKDQSVILATTKTRKQNKPASLLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVKVVGRK 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00301 214 PANTHER 60S RIBOSOMAL PROTEIN L28 67 214 IPR002672 GO:0003735|GO:0005840|GO:0006412
Vimu4g00301 214 FunFam 60S ribosomal protein L28 69 197 - -
Vimu4g00301 214 Pfam Ribosomal L28e protein family 72 192 IPR029004 -
Vimu4g00301 214 Gene3D - 70 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00301 Vimu-Chr4 2238847 2241810 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00301 65 207 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 71.329 4.60e-73 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00301 K02903 - gmx:100500189 277.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00301 4 2238847 2241810 Vimu4g00301 4 2238847 2241810 ECH