Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00297 ATGGACGGTCTAAGTTGGGATTCCTCATCACAACTTGTTGGTAACATACCGATCTTGTGGAGCAGTCAGCCTCAGGACCTTGAAGGAGAGTATCATCATTCCATGCCACACCTTTGTTCGAGTGTTCACAATCAAACATGTTATCCATATCCCAGTTCTGAAAAAGCGAGGGAGATGGTTCATCCATTCACTTCTGAGATAATGAGTATCTTGCCAAATATGAATCTGTCACAAAGAACAGCAACCATGCCTGTGAAATCAGGAACAGTTGGAGCCAGTTGGGGAGAAGCTTTAACATCTCAATCATGCCCGTCCCTTTCGGCGAATATGAACCAAACTAGCAGTTATGTAGCAGATTTCAACATGGCCCACCAGCAACAACACCTTATCAGCGGCACGCAAAACGTCAAGGCTACCTGCTCTCTCGAGTCACTTGATTGCTTGCTTTCAGCGACTAAGAATGGCAACACAGACACGTCTCTCGAAGATGATGGGATTTCCATGATGATTTTATCTGACTGCAGAAACTTATGTAACTTCAGTTATGGCAGTGCAGTCTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCCAGAAACAGTGACATGAGGTATGCATCAGTGAATGAGCTGGATGAAACAGCGTCTCAAAGCTTCTCTGATCAATATATCAGTCAAGGAAGAGTTATAGATTCTGAAGTTATTTGCACAAAAGGGAGCAATTCATGCTTCAGCGTTGCTCAGAATTCTTTTGCCACCGAAGGTGGCTTCAGGCTTATCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGAACAGGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGTCACCTTCCTTTGAAGAACCTGATCCAGAGGCCCTAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTCGGCCAGTGAACTTGGGACTGGAAGTGGTGGAAAAGCCTAAAAGGAAGAATGTTAGGATATCAACTGATCCACAGACTGTGGCTGCCAGGGAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGACGAAGCTGCAAACTACCTCAAGTTTCTCAGAGCACAAGTCAAAGCACTAGAAAATTTAGGTAACAAGCTTGACACAATGAATGGTCCTCCTAACATAGCCTTCTCTTTCAACCCTTCTTTTCCCGTACAAACACATTTCCCCGTCCAAAACCCTAGCGGCAACACCCACAACCAACAGTCCAAGGGTAGGAAATGA 1320 0.4492 MDGLSWDSSSQLVGNIPILWSSQPQDLEGEYHHSMPHLCSSVHNQTCYPYPSSEKAREMVHPFTSEIMSILPNMNLSQRTATMPVKSGTVGASWGEALTSQSCPSLSANMNQTSSYVADFNMAHQQQHLISGTQNVKATCSLESLDCLLSATKNGNTDTSLEDDGISMMILSDCRNLCNFSYGSAVSSGESESNASNARNSDMRYASVNELDETASQSFSDQYISQGRVIDSEVICTKGSNSCFSVAQNSFATEGGFRLISETSPKSKRPRWNRHPGSSNINFQQPNSSVSPSFEEPDPEALAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARERRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRAQVKALENLGNKLDTMNGPPNIAFSFNPSFPVQTHFPVQNPSGNTHNQQSKGRK 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00297 439 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 156 433 IPR045843 GO:0003700|GO:0006355
Vimu4g00297 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Vimu4g00297 439 SMART finulus 341 390 IPR011598 GO:0046983
Vimu4g00297 439 MobiDBLite consensus disorder prediction 274 294 - -
Vimu4g00297 439 Gene3D - 340 403 IPR036638 GO:0046983
Vimu4g00297 439 MobiDBLite consensus disorder prediction 419 439 - -
Vimu4g00297 439 MobiDBLite consensus disorder prediction 262 297 - -
Vimu4g00297 439 Pfam Helix-loop-helix DNA-binding domain 345 384 IPR011598 GO:0046983
Vimu4g00297 439 Coils Coil 374 394 - -
Vimu4g00297 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 401 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00297 Vimu-Chr4 2210082 2211401 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00297 94 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.458 1.42e-80 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vimu4g00297 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00297 - - gmx:100793830 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00297 4 2210082 2211401 Vimu4g00297 4 2210082 2211401 ECH