Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00292 ATGTCGTCGTTGGGTAAATCTTGGCAAGGAGACCCTTGTGCACCGTTGAAATACTCTTGGCATGGCCCATGTGAAGAGAACAAAAACAATATTGTTCCACTTGTGGCAGGCATTCTTTCAGCTTTAGTCTTTTTCATTGTATTGGGTATTGTGCTGACTATCATTTGGAGGAGACGCAACAAAAACCCAGCTTCAAAGCAAGCTGTGAGATCAAACGAAGAAGTTGTGCTGAAGACAAATAATAAACAGTTCTCGTACTCTCAGATTATGACTATAACCAATAACTTTGACAAAACAATTGGGAAGGGAGGGTGTGGAATTGTTTATCTTGGTTACTTACAGGATGGCACACAAGCTGCTGTCAAAATGCTCTCGTCTAAATCTCCTGAAGGATCTCAGCAGTTTCAGACAGAGGCTCAACTCTTAATGCGTGTGCATCATAAGAACTTAGCTTCCTTTCTTGGATACTGTAATGAAGTCGGACGCACAGCCATCATTTATGAATACATGACTAATGGTAACTTGGAAGAGTATCTTTCAGTAGATCCTAAAAGAGAACCATTGAGTTGGAGACAGAGGATTCAGATAGCAGTTGATGCTGCTCAAGGTATCGAGTACTTGCATCATGGCTGCAAGCCACCAATAGTCCATAGAGACATAAAGACTGCAAACATTTTACTGAATGAGAAAATGCAAGCTAAAGTTGCCGATTTCGGTTTCTCAAAATTTTTCTCAGCTGAAAATGAAAGTTACGTATCAACTGTAGTTATTGGCACGGTTGGATATCTTGATCCAGAATACTACATATCCAGCAGGCTGACTGAAAAAAGCGACGTTTATAGTTTTGGCATTGTACTTTTGGAGCTAATTACTGGGCAGCCAGCCATAATAAAAGGTCATCAGAACACTCACATTGTGCAATGGATTAACCACTTTCTTGAAAGGGGAGATATACAACAAATTGTTGATCCAAAGATGAAAGGAGATTTTGACTTTGGTTCTATGTGGAAGGCCTTGGAGGCAGCAGTATCTTGTGTGCCTTCAATCTCTATCCAAAGGCCATCAATGAATCACATTGTCGCTGAACTGAAAGAGTCCTTAAAAATGGAAGCAACTCGAGAACAAGAAGGCATCAACTCGATTGAAATGAACGTTGTTGATCTTGAAGCTGATTGGGGCCCAGATGCAAGATAG 1194 0.407 MSSLGKSWQGDPCAPLKYSWHGPCEENKNNIVPLVAGILSALVFFIVLGIVLTIIWRRRNKNPASKQAVRSNEEVVLKTNNKQFSYSQIMTITNNFDKTIGKGGCGIVYLGYLQDGTQAAVKMLSSKSPEGSQQFQTEAQLLMRVHHKNLASFLGYCNEVGRTAIIYEYMTNGNLEEYLSVDPKREPLSWRQRIQIAVDAAQGIEYLHHGCKPPIVHRDIKTANILLNEKMQAKVADFGFSKFFSAENESYVSTVVIGTVGYLDPEYYISSRLTEKSDVYSFGIVLLELITGQPAIIKGHQNTHIVQWINHFLERGDIQQIVDPKMKGDFDFGSMWKALEAAVSCVPSISIQRPSMNHIVAELKESLKMEATREQEGINSIEMNVVDLEADWGPDAR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00292 397 Pfam Protein tyrosine and serine/threonine kinase 96 310 IPR001245 GO:0004672|GO:0006468
Vimu4g00292 397 SUPERFAMILY Protein kinase-like (PK-like) 74 363 IPR011009 -
Vimu4g00292 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Vimu4g00292 397 ProSiteProfiles Protein kinase domain profile. 94 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00292 397 PIRSF TyrPK_CSF1-R 180 293 - -
Vimu4g00292 397 PIRSF TyrPK_CSF1-R 341 387 - -
Vimu4g00292 397 PIRSF TyrPK_CSF1-R 17 186 - -
Vimu4g00292 397 PANTHER OS07G0107800 PROTEIN-RELATED 27 367 - -
Vimu4g00292 397 SMART serkin_6 94 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu4g00292 397 Gene3D Transferase(Phosphotransferase) domain 1 170 390 - -
Vimu4g00292 397 Gene3D Phosphorylase Kinase; domain 1 76 169 - -
Vimu4g00292 397 FunFam Leucine-rich repeat receptor-like protein kinase 70 169 - -
Vimu4g00292 397 CDD STKc_IRAK 100 365 - -
Vimu4g00292 397 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 170 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00292 Vimu-Chr4 2026699 2029233 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00292 26 397 Receptor kinase-like Gene Family AT1G51850 47.815 6.49e-120 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vimu4g00292 PK_Tyr_Ser-Thr 7.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00292 - - gmx:100791717 648.662